Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq87 93.3 8e-14 seq19 89.7 9e-13 >seq87 Length=1962808 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| |||||| || |||||||| | || | ||||||||| || ||||||||||| ||| Sbjct 767439 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCTTGGATACTGTCTTTTTCATACTGAGG 767380 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || || || || ||||| || || || || || || || || | ||| ||||| | || Sbjct 767379 AAGAAGTTCAACCAGGTCAGCTTCCTCCATGTCTACCACCACTGTACGATGTTCATCCTG 767320 Query 52021 GGATGGATAGGTATTAAATGG 52041 | ||||| || || || ||| Sbjct 767319 TGGTGGATCGGCATCAAGTGG 767299 >seq19 Length=3792234 Score = 89.7 bits (98), Expect = 9e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||| || ||||| | |||| ||| | | || || || || || || |||| ||||| Sbjct 1300569 GATGGCAGGAGCACTGTGGTGGTATTTCGTCTCTAAGGGCATTGAGTATCTGGACACGGT 1300510 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 |||||||| || ||||||||||| || ||||| | || || ||||| || || || | Sbjct 1300509 GTTTTTCATCCTGAGGAAAAAATTCAACCAGGTGACCTTCCTGCACGTCTACCACCACTG 1300450 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | ||||| || || | ||||| || || |||||| | || ||||| ||| Sbjct 1300449 CAGCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 1300398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922853082291400