Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq321 102 9e-17 seq1622 100 3e-16 seq597 98.7 1e-15 seq1198 95.1 1e-14 seq68 95.1 1e-14 seq6242 89.7 6e-13 seq5868 89.7 6e-13 seq16 87.8 2e-12 seq4014 86.0 7e-12 >seq321 Length=734258 Score = 102 bits (112), Expect = 9e-17 Identities = 72/82 (88%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60058 AAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 548882 AAAATTGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 548941 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 548942 CTYACCACTATACTAACGAGGA 548963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 548303 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 548362 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 548363 CTATACTAACGAGGA 548377 >seq1622 Length=59531 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12997 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12938 Query 60126 TACTACCGAGGA-TTGA 60141 ||||| |||||| |||| Sbjct 12937 TACTAACGAGGAGTTGA 12921 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 13600 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13541 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 13540 TACTAACGAGGA 13529 >seq597 Length=260031 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100197 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100256 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 100257 TACTAACGAGGA 100268 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 104538 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 104597 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 104598 TACTAACGAGGA 104609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 149807 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 149748 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 149747 TACTAACGAGGA 149736 >seq1198 Length=111961 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 60785 CTCCCCGTCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 60844 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 60845 TACTAACGAGGA 60856 >seq68 Length=2311667 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 || ||||||| | ||||| |||| |||| || ||||| | || ||||| || Sbjct 1552596 TGCCCTCCTC--AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCG 1552539 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 | ||| ||||| || || ||||| || ||||| || || |||| ||||||||| | Sbjct 1552538 GACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGA 1552479 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCC 43133 || | || || || ||| ||| || || | ||| | | ||||| | ||| Sbjct 1552478 GGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCC 1552419 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || || ||||||||||| || || || || ||||| |||||||| ||||| ||||| Sbjct 1552418 ACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTTTAC 1552363 >seq6242 Length=716 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||| Sbjct 125 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACTATACTAACGAG 66 Query 60136 GA 60137 || Sbjct 65 GA 64 >seq5868 Length=2165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 321 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGTTACTCTCCACTA 380 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 381 TACTAACGAGGA 392 >seq16 Length=4474261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATAC 60128 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1523989 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATAC 1523937 >seq4014 Length=3926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||| | |||||| ||||| Sbjct 3566 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCAGGGATACTCTCCACTT 3507 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3506 TACTAACGAGGA 3495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571604705159800