Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq20 113 3e-20 seq167 109 4e-19 >seq20 Length=3646065 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 107726 CTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGC 107785 ||| |||||| ||||||||||||| || | ||||| || || |||||| || | || | Sbjct 3099831 CTCTATGGTGATCCATGAGAAGATCGAGATGTTTGAGCGACTCCTGCGATCCATTTACAC 3099772 Query 107786 CCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAG-AGACTTTCAAAGAGG 107844 ||||||| ||| ||||| || |||||| ||| || || | || ||||| | || Sbjct 3099771 TCCTCAGAGCATTTACTGCCAACATGTGGATCAGAAATCTCCTGTGGATTTTCACTG-GG 3099713 Query 107845 CGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGG 107904 | || ||| | || | |||||||| |||||||| ||||| |||||||| || | | Sbjct 3099712 CTGTGAAGTCTATAGTGTCCTGCTTTCCCAATGTATTCATAGCCAGTAAATTAGAAAATG 3099653 Query 107905 TGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGA 107953 | || || ||||||||||| || || | ||||||||||||| Sbjct 3099652 TCACATAGGCTGTTTGGTCCAGAGTCCAGGCACATTTGAACTGTATGGA 3099604 >seq167 Length=1093806 Score = 109 bits (120), Expect = 4e-19 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 |||||||| || || || ||||| | |||||||| || || || ||||| ||||||||| Sbjct 549578 AACTTTGAGCGACTTCTTCGAGCGATCTATGCCCCACAAAATATTTACTGCGTCCACGTG 549637 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCA---AGGCCATTATTTCCTGCTTC 107870 ||| || | | || | | | | || | || ||||||||| |||||| || Sbjct 549638 GATAAAAAAGC---AAAGCCCTCCGTAACCGCTGCCATCCAGGCCATTACTTCCTGTTTT 549694 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 ||||| |||||| ||| |||| || || |||||| || ||| |||| | | || Sbjct 549695 CCCAACGTCTTCCTGGTCAGTCAGGCTGTGGAGGTGGTCTACGCCGGCTGGCCTCGTGTA 549754 Query 107931 CAAGCTGACCTGAACTGTATGG 107952 |||||||||||||||||||||| Sbjct 549755 CAAGCTGACCTGAACTGTATGG 549776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348142376793090