Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq345 123 5e-23 >seq345 Length=614307 Score = 123 bits (136), Expect = 5e-23 Identities = 398/609 (65%), Gaps = 13/609 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| ||| | ||||| | ||||| || |||||| || ||||| || || Sbjct 402940 CAGAGATTTCTCCTACAACTTCTTCGGATTCAAGACTCTGGAGCGCTCCTATCTGCTGAA 402999 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 ||| | |||||| | | || || ||||||||| | ||| | ||| |||| ||||| Sbjct 403000 AATCAACGGCAAGGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGAT 403059 Query 248925 TCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACA--CCGGAATGAGTGAACGCTG 248981 ||| | ||||| || |||| | |||||||||||| | | | || ||| || Sbjct 403060 CCACGGGACCGACATCGA-AGCGGCCATCGAGACGTACAATCTGCTGTCAGAGAA--GTG 403116 Query 248982 GATGACACATGCCACACCGACGCTCTTCAACGCCGGTACC-GTCAACAATCAGCTGAGCT 249040 | | || || ||| | ||||| ||||||||||| || ||| || | |||||| | Sbjct 403117 GTTCACTCACGCCTCTCCGACTCTCTTCAACGCAGGAACCAATCGGC-CGCAGCTGTCCA 403175 Query 249041 CGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAAC 249100 ||||| | || |||||| |||||||| |||| ||||| || ||||| || || | Sbjct 403176 GCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCCTGAAGC 403235 Query 249101 AGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAG 249160 || || ||||| || | || || || || || | | ||| | |||| || Sbjct 403236 AGTGCGCCCTCATTTCCAAGTCTGCCGGAGGCATTGGCGTAGCGGTCAGCTGCATCAGAT 403295 Query 249161 CGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTC 249220 | | || |||||| ||||| || ||| | | || | || ||| | || Sbjct 403296 CCACTGGGAGCTACATCGCCGGTACCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGA 403355 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG----GGGTCG 249276 || | | |||||| | | | || | || | ||| | |||| ||| | Sbjct 403356 GAGTTTACAACAACACCGCTCGCTACGTCGATCAAG-GTGGCAACAAAAGACCCGGGGCC 403414 Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 ||||||||||| ||||| ||||| || | || || ||||| || |||| ||| Sbjct 403415 TTCGCCATGTACTTGGAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAG 403474 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| ||||| ||| |||||| | ||||| ||||| | ||||||| || ||||| Sbjct 403475 AACACTGGCAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATCCCCGAC 403534 Query 249397 TTGTTCATG 249405 |||||||| Sbjct 403535 CTGTTCATG 403543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073356628930880