Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq715 138 2e-27 >seq715 Length=171852 Score = 138 bits (152), Expect = 2e-27 Identities = 265/384 (69%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 19371 TTAAAATAGGATCATCTTCTGGTCTAAAAATTTTATTAAGTATTGGTGGTTGG-TTAACA 19429 ||||||| ||| |||||| ||||||||| | || | | | ||| || ||| | Sbjct 76551 TTAAAATGTTATCGTCTTCTTCTCTAAAAATATATTTCAAAACTT-TGGACGGCTTAGTA 76493 Query 19430 AAAATATATCTAGGACTTGCTGCATCTTTTCCTCCAGAAAGTCTCGTGCCAAATTGGCCA 19489 || || |||| |||| ||||| ||||| ||||| ||||| | ||||||||||||| Sbjct 76492 AATATGTATCGTTCGTTTGCCGCATCCTTTCCACCAGACAGTCTAGAGCCAAATTGGCCA 76433 Query 19490 TCCTCTTCTAAAAGAGGTATGTTATTGGCTCCAACAAAAGTTTGTGCCATTTTAATGATA 19549 || ||||||||| || | ||| || | |||||| | |||||||| ||| ||||| Sbjct 76432 TCGGGTTCTAAAAGTGGCAGGTTGTTTGTTCCAACGTATTGTTGTGCCAGTTTGATGATG 76373 Query 19550 GTGTCAAATAGATTTTGTTCTCCATGTTTATAATCTGTTTTTTGTGCTACGAAAGCTCCT 19609 || || | | |||||||||||| ||||| || || |||| || || || | | | Sbjct 76372 GTTTCGCACAAATTTTGTTCTCCGTGTTTGTAGTCGGTTTGTTCGGCGACATACCCGCTC 76313 Query 19610 AATTGGGCAACTTTAATATTATTTT----TTCCATTCCATTGTTT--TAA-TCCAAAAAT 19662 || || | ||||| | | ||||| | | || ||| ||| ||| | | |||| Sbjct 76312 AACTGAACGACTTTCAGA-AATTTTGAAGTGCTTTTGAATTTTTTCCTAATTGCGTAAAT 76254 Query 19663 TACTTTTCTTTGTGATTCCTTTAGTCCGTCAATTAAATGTGGTAAACTTCTTTTACAATC 19722 || || ||||| || || |||| || |||| | || |||||||| ||||| || Sbjct 76253 CACCTTCCTTTGCGACTCTTTTAAACCATCAAGACACGACGGCAAACTTCTCTTACAGTC 76194 Query 19723 TTCAATTGAAAATTTAATTAGTTC 19746 |||| ||||||||||| | ||| Sbjct 76193 TTCATACGAAAATTTAATCATTTC 76170 Score = 136 bits (150), Expect = 5e-27 Identities = 188/263 (71%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 167545 ATACAATTATATTGTGGAAATAATGCACGTGATGAAGGATTAATAAATGGAACAAAAACT 167604 ||| || | ||||||||||||||| | || |||||||| ||| |||||||| |||||| Sbjct 3589 ATAGAAATCTATTGTGGAAATAATTCGCGAGATGAAGGTTTATTAAATGGATCAAAAATA 3648 Query 167605 TTAGGAACAAGATATCAATGTTTAAAGAAAGGAATAGGAAAAGGTTTAAATGAACCCATA 167664 ||||| || | || |||||||||||||||||| | |||||||| || ||||| || Sbjct 3649 TTAGGTACTCGTTACCAATGTTTAAAGAAAGGAGTTGGAAAAGGACTAGCCGAACCGGTA 3708 Query 167665 TTAAAATATAATAATGATTATGAACCTATAGAAAATGTTCGAATTTATTGCGGGAATGGT 167724 || ||||| || |||||||| |||||| || | | ||||| || |||| Sbjct 3709 TTGGTTCATAATTTGGAATATGAACCAATAGAAGATTATGGTTCATATTGTGGTCTTGGT 3768 Query 167725 GCACTTCCTAATAATAAAGATAGATTTGGTACACGAGATGAATGTTTAAGAAAAGGATTT 167784 | || | || ||| | ||||| || || || || |||||||||||||| ||| Sbjct 3769 AGTTTACCAGAAAACAAACTGCGTTTTGGAACGCGTGAAGAGTGTTTAAGAAAAGGGTTT 3828 Query 167785 GCAGTAGGACAAAAGCAAAAGTA 167807 | | || ||||| |||||| Sbjct 3829 GGTATTGGGCAAAAAATAAAGTA 3851 Score = 136 bits (150), Expect = 5e-27 Identities = 426/651 (65%), Gaps = 28/651 (4%) Strand=Plus/Plus Query 129532 GAAATTAATTCTCATTTCATTGTATGGCAAAGCAGCAGTAGGAAGAGCAACTCCAGAATC 129591 |||||| ||| ||||||||||||||| | |||||||| || | ||| ||||||| || Sbjct 52636 GAAATTGATTTGCATTTCATTGTATGGAAGGGCAGCAGTTGGCAAAGCCACTCCAGTGTC 52695 Query 129592 GCGTGAAAAGAAGAAAGGTAATGGCAAATTCAAGTCAGCTTCAGGA-AGACTTACTGTTG 129650 | || || ||||| || |||||||| |||||| | || | ||||| | Sbjct 52696 TCTCGAGAAAAAGAATGGCAATGGCAAGTTCAAGGTGGTGCCACCAGAGACTCCGAG--- 52752 Query 129651 CAGGAGCAACAGGTACAGGTTGT---GGTTGAATAAGAGCAGAAACATTTCCAATCATAT 129707 || || | | ||||| || | ||| || | || | || |||||||| | Sbjct 52753 --GGTGCCTC-----CTGGTTGAACGGGGTTAATCAGGGATGAGATGTTGCCAATCATGT 52805 Query 129708 TATCGTAACCAACTGCCTTTGAC-GCAGGTGTTGTAAATGCGGCCCAAAAATCTAGATGA 129766 ||||||| || ||| |||| || || || || |||| |||||| || | ||| Sbjct 52806 TATCGTAGCCGT-TGCGTTTGCTTGCTGGGACCGTGAAAGCGGACCAAAAGTCCAAATGG 52864 Query 129767 TAATGATCAAATCTTGCTGCTACCAAATCGTTAAATGTAATACTACATTCTCTGATTAAG 129826 || | ||||| | ||||| ||||| |||||||| || || | ||| | || | | Sbjct 52865 TAGTTGTCAAAGCGGGCTGCGACCAAGTCGTTAAACGTGATGGTGGCTTCGCGAATCAGG 52924 Query 129827 TTATGCATAAAATTTCTACACCACCTAATTCTACCATTGGCACCAAATTGATTTGTTGAT 129886 || ||||| | ||| | ||| | || || | | | | || | |||| Sbjct 52925 TTGTGCATGAGGTTTTTGGTCCATCGAAGAGTAGCGGTTGGAG--AAGCGGTTTGC---- 52978 Query 129887 AACAAAGTTACAGATGGAATTCTCACTCTTAGCCAAGTATATAACAAATAATCTCCGGCC 129946 || | || || || ||| ||||| |||||| | | | ||||| || || || Sbjct 52979 AAAAGCGTGACCTGGGGGATTTGCACTCGTAGCCACGACTGCAGTAAATAGTCGCCAGCG 53038 Query 129947 CTAGAAATGGATGCAGACCATTCGCTTCCAAAGTTAGCTG-AT--CCGTTTGCTCTAGTT 130003 | || || || | |||||||| ||| || |||| || || | ||| | Sbjct 53039 CGCGAGATCGAGACCGACCATTCTTGTCCGAAT---GCTGCATTGCCTGTATTTCTGGAG 53095 Query 130004 AAACTAACAGGTACTTGGGTGAACCATGTTGCTTTTCTAGTTTCTCTTACGAAATAAGCT 130063 | | || || |||||||||||||| |||| | | | |||||||||| || || || Sbjct 53096 AGAGGCACTGGAACTTGGGTGAACCAGGTTGACATGCGAATTTCTCTTACAAAGTATGCG 53155 Query 130064 GTGGATGTTTTACCACCATACATATATTTTTCAATTTCATCTTTAGTGGCGATATCGATG 130123 |||| | | ||||||||||||||||| ||||| || |||||||||||||| Sbjct 53156 GTGGCTTGGGGGCTGCCATACATATATTTTTCGATTTCGTCAAACGTGGCGATATCGATA 53215 Query 130124 AAACCAGAAGTTACATTTGACGAAGAAATAGACATCTTTGTTTATTTATTa 130174 || || || |||| ||| || ||||| |||||||| ||| || |||||| Sbjct 53216 AACCCTGAGGTTATATTAGATGAAGACATAGACATGTTTAATTTATTATTA 53266 Score = 104 bits (114), Expect = 3e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 142323 GTATATGGAACTTCGATTAATGTAACATTATTATCATTACACATTCTTCTTTTTAATTCG 142382 |||||||||||||| |||||||||| || || || || ||||| | |||||||| |||| Sbjct 87584 GTATATGGAACTTCTATTAATGTAATGTTGTTGTCTTTGCACATACGTCTTTTTAGTTCG 87643 Query 142383 TCTCTATATTGTTGATTTCTAAAAGCTTCTTTGTTTTTATGAAAATGAGGTATA-AATTT 142441 ||||| |||| ||| || ||||||| |||||||| ||| | || | ||| | Sbjct 87644 TCTCTGTATTTTTGGTTGAGGGAAGCTTCAACATTTTTATGGAAA-AATGTCGAGAATGT 87702 Query 142442 ATAATGCTGAGCGCCATTGTATTCAACTCCTAATTTTAATTTAGGACTGTAACAATCTAT 142501 ||||||||| || ||||| || || || | ||||| | | | |||| || || Sbjct 87703 ATAATGCTGTTTTCCGTTGTACTCGACCCCCAGTTTTAGATCTGCGTTAAAACAGTCAAT 87762 Query 142502 TTCTAAATT 142510 ||||||||| Sbjct 87763 TTCTAAATT 87771 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/200 (70%), Gaps = 14/200 (7%) Strand=Plus/Minus Query 106945 AATATAGTTTGAAATCCAGGAGTTAAATGAATTACCCATATTCCCTCAGGACCAATAACA 107004 |||| | ||||||| | ||||| | |||||| ||||| ||| || |||| | ||| Sbjct 162411 AATAAGGATTGAAATTCTGGAGTAAGGTGAATTGACCATAGTCCTTCCGGACTGACCACA 162352 Query 107005 AAATGTGCCAACTGATCCATATCTGCCAAATATTGTGAAGC-------AACAACTCTCAT 107057 ||||| || | ||||| || |||| | ||||| ||||| |||| Sbjct 162351 AAATGCGCGAGTTGATC-------GCGAAATTGTAAGAAGCTTAGCGCAACAATCATCAT 162299 Query 107058 ATCTTGTCCACTAGGCCAAGATATAAAAGCTCCATATTCTCTAGTAACTTTATCTGGATG 107117 |||||| ||||| |||||||||||||||||| | | || | ||| | | |||||| || Sbjct 162298 ATCTTGGCCACTTGGCCAAGATATAAAAGCTTTAAACTCGCGAGTGATGTGATCTGGGTG 162239 Query 107118 AGAATGAAAAACAAAAGGAG 107137 | ||||||||| | |||| Sbjct 162238 GGTATGAAAAACGAGCGGAG 162219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 31816 GGAATTATCGATATATAAAGCTGTGTAATCTCCTGTAACTTGTGTC-ATGTATGCTTTAA 31874 |||||| | ||||||||||||||| ||||| ||||| | |||| || ||| | || || Sbjct 152224 GGAATTCTGGATATATAAAGCTGTATAATCGCCTGTTA-TTGTATCCATGATTTTTTCAA 152282 Query 31875 AAATTTCAAATTTTGGAATAACACCTGCATAATTTAAATAAATATTTTTGAGATTATTTT 31934 | | ||| ||| || | || ||||||||| ||||| | ||| |||| Sbjct 152283 ATAAACTAAACGATGGTATTATTCCAGCATAATTTTCATAAAGACGTTTTC--TTATGGC 152340 Query 31935 CA--TTAGTTTCTCTAAAAATGAAAACTCCGTCTACATTTGTTCTAATAGCAGGAGGAAT 31992 || || | |||||||||||| ||||| || || | |||| ||| ||| || || Sbjct 152341 CACATTTGATTCTCTAAAAATAAAAACCCCATCAATGTTTGATCTTATATGGGGTTTAAC 152400 Query 31993 ATCTGTAGCATGTTGAAGAGAAAGTATATACAAAAGTTTCCAATGACGACCATTTTTAAA 32052 ||| |||| ||| ||||| | || || | | |||||| || || ||||||||||| Sbjct 152401 GTCTAGTGCATATTGCAGAGATACAATGTATAGCATTTTCCAGTGGCGGCCATTTTTAAA 152460 Query 32053 TAA 32055 || Sbjct 152461 CAA 152463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679561296601200