Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq345 513 1e-140 seq226 111 1e-19 seq38 111 1e-19 seq68 86.0 6e-12 >seq345 Length=614307 Score = 513 bits (568), Expect = 1e-140 Identities = 1076/1589 (68%), Gaps = 43/1589 (3%) Strand=Plus/Minus Query 22366 CTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGAT 22425 ||| | ||| ||||| ||| || | | || || ||| |||||||||| || | Sbjct 404527 CTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 404468 Query 22426 GGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCG 22485 | |||| ||||||| ||||||| |||| || | || ||||| ||||| | ||| | Sbjct 404467 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCT 404408 Query 22486 GCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGC 22545 ||| ||| |||||| ||| ||| |||| || || ||||| ||||| ||||| || Sbjct 404407 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 404348 Query 22546 GGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT 22605 ||| || || || ||||||||||||| ||| || |||||||| ||||||||| | || Sbjct 404347 GGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGAT 404288 Query 22606 TTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 || ||| |||| | |||||||||||| || | ||||||| ||||||||||| || Sbjct 404287 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGGCGTC---TTGTCCCACATGTC 404231 Query 22666 GTATTGCAACACGCCGCGACTCGCCGGGCT-GCCTTCGTACGTTTCGTACGGACCATATA 22724 ||| |||| | ||| | || | ||||| |||||||||||| ||||| || || | Sbjct 404230 GTACTGCAGGATGCCCCTGCT-GACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTT 404172 Query 22725 TCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCT 22784 | || || || |||||||| ||||||| ||| |||| || || ||||| || || | Sbjct 404171 TGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGA 404112 Query 22785 TGTTCAATTCGGCGGCGGCGACG--CTTTCGTACGGCATACGCATCATCACGAACGCGTC 22842 |||| | | || | | | || ||||| | || |||||||| | ||| ||||| Sbjct 404111 TGTTGAG--CAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTC 404054 Query 22843 CGCCATACCCTGAACGCCTATACCGATCGGTCGGTT---TTTCAGATTCGACACTTTTGC 22899 || | |||||| || || || |||||||| | || ||| || |||| | || Sbjct 404053 TGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTG---TTGGACATCTCGGC 403997 Query 22900 CTCGGGCAAAGGATACCAATTCGAATCGATTGTTCT-GTTCAAGTTTCTGGTCACAATTT 22958 |||||| | || || | || || | | || ||| |||||||||| || | | || Sbjct 403996 CTCGGGGACCGGGTAGTAGTT-GATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTT 403938 Query 22959 TCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTTGTTGA 23018 | || | | |||||| ||| || | | || || |||||| Sbjct 403937 TGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGA 403878 Query 23019 CGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTT 23078 ||||| || || |||||||| || ||||||||||| | ||||| || || | | Sbjct 403877 GAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCT 403818 Query 23079 CGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGC 23138 | || || | ||||| ||||| || ||||||| ||| ||||||||| || | |||| Sbjct 403817 CCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGC 403758 Query 23139 ACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTC 23198 ||| || ||||| | |||||||||||| || ||||| ||| ||||| ||||| || Sbjct 403757 ACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGT 403698 Query 23199 GCCACATAGTCTGAGCGTGAAC---ACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTT 23255 ||| | |||||| | || ||| ||| ||| ||||| | |||||| | Sbjct 403697 ACCAAAGCTGCTGAGCTTTCACCACACGCTTCAC---CCTCCCTTCCTTCTCGTATGTAG 403641 Query 23256 GGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGAC 23315 ||||| | ||||| || | || | || ||| | || || || | | | |||| Sbjct 403640 TGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGAC 403581 Query 23316 ACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 |||| ||| ||| || | || || || |||| || || || || ||||| | Sbjct 403580 ACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACA 403521 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | || ||||| || || | ||| | | |||||| ||||| |||||||| |||| || | Sbjct 403520 GGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTA 403461 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||| |||||||| |||||| ||||| | ||| | ||| || || || ||||| | Sbjct 403460 GGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTT 403401 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | ||||| || ||||||||||| || || ||||||||||| ||||| ||||| || || | Sbjct 403400 TGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCA 403341 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTG- 23611 | |||||||| ||| || || | ||| || | | || | | | Sbjct 403340 GCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTC---CCAGTGGATCTGATGCAGC 403284 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 ||| || | || ||||||||| | || || || || | ||||| || ||||| ||| Sbjct 403283 TGACCG-CTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTG 403225 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 ||||||||||| ||||||||||| ||||| | |||| |||||| || |||| ||| Sbjct 403224 TCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGC 403165 Query 23732 G--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC 23788 | | | | || | || ||| || ||||| |||||| || || ||| ||| Sbjct 403164 GGCCGATTG--GTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAA----CCACTTC 403111 Query 23789 ---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATG 23845 |||| ||||||||||| |||||||| || || ||||| ||||| || || | Sbjct 403110 TCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACA 403051 Query 23846 GCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGA 23905 | || | ||| | ||||| || || | |||| || |||||| ||||| | |||| Sbjct 403050 GACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGA 402991 Query 23906 TATGAACGTTGCATCGTTTTAAATCCAAA 23934 || || || | || || || ||||| || Sbjct 402990 TAGGAGCGCTCCAGAGTCTTGAATCCGAA 402962 >seq226 Length=808630 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| ||||| || ||||| || || ||||| || |||||| | || || || || Sbjct 361573 AAACATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCC 361632 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| | |||| ||||| | || ||||||||||||| | || || || Sbjct 361633 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 361692 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || ||||| ||||| ||| ||||||| || || ||| || Sbjct 361693 CCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 361752 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || ||||| || ||||| || | |||||||| || Sbjct 361753 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGG 361803 >seq38 Length=2821725 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || | | ||||||| || || || ||||| | ||| ||||||| || | ||| | Sbjct 1026152 TTTCCACTCTTTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAGATCTCTGGCCC 1026093 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | || ||||| ||||||||||| |||| |||| ||| || |||||||| | ||||| Sbjct 1026092 TCTGTTCTTCTTTCCCGGTGTTCTTCTTCAGGTCCAGAAATTCAAACACGTCTGAATGCC 1026033 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| | || ||||| || || |||| Sbjct 1026032 ACGGCTCCAGGTACATAGCGAACGCCCCGGGCCTCT 1025997 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||| || || || || || ||||| | || || ||||||| || |||| Sbjct 1026610 GTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGG 1026551 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | ||||| | ||||||||||||||||| ||||| || || || |||| Sbjct 1026550 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTCTGTCTGC 1026491 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCT 23242 ||||||||||| || ||||| |||||| | || ||| | |||||| || Sbjct 1026490 GACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCACCCGCCTGGTCCTGCCCTCC 1026431 Query 23243 TCCTCGTACTTTT 23255 | ||| ||| ||| Sbjct 1026430 TTCTCATACCTTT 1026418 >seq68 Length=2311667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA--A 31246 ||||||||| || || || ||||| || || || || || ||||| || || || || | Sbjct 1552365 AAACATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCA 1552424 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 | || |||| | || || || || | || ||| || |||||| | || || Sbjct 1552425 CGGT--GACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCT 1552482 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || |||||||||||| ||||||| ||| || ||| Sbjct 1552483 GACCAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGAC 1552542 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGG 31414 || ||||| | || ||||| || || || ||||| || | |||||| Sbjct 1552543 TACAACATCGATAAGGAATCAACCCTGCACCTGGTCCTGCGTCTGAGG 1552590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445600435597200