Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq345 480 1e-130 seq38 91.5 2e-13 >seq345 Length=614307 Score = 480 bits (532), Expect = 1e-130 Identities = 1277/1945 (66%), Gaps = 23/1945 (1%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || ||||| | ||||| || | || | || ||||| ||||| Sbjct 404496 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 404437 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||| ||||| || | || || || ||||| || || ||||| |||| || Sbjct 404436 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 404377 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 404376 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGC 404317 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || ||||| | |||| | ||| || || || || | | ||| | ||| || Sbjct 404316 AGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 404257 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | ||| | | ||| || || || || || | ||| || Sbjct 404256 TCAGTCGGCGTCTTGTCCCACATGTCG-------TACTGCAGGATGCCCCTGCTGACGGG 404204 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| ||| | || || || || || || || | || || | || || ||||| | Sbjct 404203 CGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAG 404144 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || |||| || ||||| ||||| |||| | || || || || ||||| || || Sbjct 404143 AGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTC 404084 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| || ||| | | || || ||||| ||||| || || || || || ||||| || Sbjct 404083 AAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGG 404024 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | || || || || || || || || | || || || || || || || || Sbjct 404023 CCTGTGGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGAT 403964 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 62915 || || | ||| |||| || |||||| |||| |||||| ||| ||| | Sbjct 403963 CTTGTTCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGT 403904 Query 62916 -CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 ||| || | || ||||||| | || | ||||||||||| || || || ||||| Sbjct 403903 GCGCTCAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTC 403844 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 | || | |||| | | ||| ||||| | || || |||||||| || || | Sbjct 403843 GTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAG 403784 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 ||| || || || ||||| |||| ||||| || || || | ||| | || || || || Sbjct 403783 ATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGT 403724 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGT 63153 || |||| || ||||| || || | ||| | | || |||| || | | | || Sbjct 403723 CTCCGTCTGGGACTCTATGATGGCGTACCAAAGCTGCT-GAGCTTTCACCACACGCTTCA 403665 Query 63154 ATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63213 |||| ||| | |||||| ||| |||| || ||||| || ||||| | || Sbjct 403664 CCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGT 403605 Query 63214 CCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63273 | | | ||||| || | |||||||||| ||||| || || || |||||| | Sbjct 403604 CGAGCCCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCT 403545 Query 63274 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCG 63332 |||| || || || || ||||| || || ||| || || ||||| | ||| || ||||| Sbjct 403544 TCATGAACAGGTCGGGGATCCACAGGGC-ATAGAAAAGGTCTCTGGCTCTCTGCTCCTCC 403486 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || || ||||| || || || ||||| | | | ||| ||||||| || |||||| Sbjct 403485 TTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAG 403426 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | || || | |||||| || || ||||| | ||| | ||||||||| Sbjct 403425 TACATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTG 403366 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || |||||||||| ||| |||| | ||||| || | || |||||||||| ||| ||| Sbjct 403365 TTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAG 403306 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | ||| ||| | || || | | || || || || || || || || || Sbjct 403305 CTCCCAGTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATG 403246 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | ||||| | || | ||||| ||||||||||| ||||| || || ||||| || Sbjct 403245 AGGGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 403186 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 | || ||||| |||| || | ||| | ||||| || || || | || ||||| ||| Sbjct 403185 AAGAAGCAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCG 403126 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 || || ||||| || || || || |||||||||||||| || || | || || || Sbjct 403125 TGAGTGAACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTC 403066 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 || || || || | || | ||| | ||||||||| || | || | | ||| | Sbjct 403065 CCGTGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCG 403006 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 || ||||||| || ||||| |||| ||| || || || || ||||||| || || Sbjct 403005 TTGATTTTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAA 402946 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATG 63932 |||| || ||||| || | || ||||| || || | | ||| || | || Sbjct 402945 TCTCTGTCATAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCAGAACGATGTGCAGC 402886 Query 63933 GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA 63992 || | || || || || || || || ||| || | |||||| | | Sbjct 402885 GTGTCTTTGGAGATCATGGGGGAGTGGCGTTGGTTCAAAGGGTTGATGTAGTTGTACAGG 402826 Query 63993 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATT 64052 ||||||||||| || || || | || || || || ||||| || ||||| | || || Sbjct 402825 TCCTCCATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACAGCGATC 402766 Query 64053 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCT 64112 || || || || |||||||| || || |||| || || ||||| || || || ||| Sbjct 402765 CTCGCAGCGAGGATGGCATAGTCGGGGTGTTTGGTCGTCAGCGTGGCAGCAATCTCAGCT 402706 Query 64113 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATA 64172 || || ||||| | || || || || || || |||| | ||||| || |||||||| Sbjct 402705 GCTAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTATACAGACCTTGGATCACCTTCATG 402646 Query 64173 GCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACG 64231 | || | | || || | | || | ||| | ||||||||| || |||| ||||| Sbjct 402645 GTGATCTGAGCCGGGTCCACAAACTCAGAGTTCAGGCCATAGCA-AAGCTTCTGGATACG 402587 Query 64232 AGACGTGATTTTATCAAACATGACA 64256 ||| ||||||||||| ||||||||| Sbjct 402586 AGAGGTGATTTTATCGAACATGACA 402562 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 |||| || ||||| || | ||| || || ||||| || ||||| || || || || | || Sbjct 1025018 TAGTGCCTGCATTGAACAGGGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAAT 1024959 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 |||| ||||||||||||| || || || || |||||| || || | || | ||| | Sbjct 1024958 TGTAAGTCTCAATAGCTGCATCGATGTCTTTTTTATGAATCCCAACCGATACCCTCATCA 1024899 Query 63781 ACATGTGCTGAGGTCTTTCA 63800 ||||||||| ||||| ||| Sbjct 1024898 GCATGTGCTGGGGTCTCTCA 1024879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629583111034800