Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq345 486 3e-132 seq38 91.5 2e-13 >seq345 Length=614307 Score = 486 bits (538), Expect = 3e-132 Identities = 1296/1973 (66%), Gaps = 17/1973 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||||||||| || | || || | | | ||||| ||||| || ||||| | || Sbjct 404527 CTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 404468 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || ||||| || || || | || || ||||| || | || || Sbjct 404467 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCT 404408 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 404407 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 404348 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || ||||| | |||| | ||| Sbjct 404347 GGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGAT 404288 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || || | ||| | | Sbjct 404287 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGG--CGTCTTGTCCCACATGTCG 404230 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || | ||| || ||| ||| | || || ||||| || || || Sbjct 404229 TACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTG 404170 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 | || || || || || ||||| | || |||| || ||||| || || |||| | Sbjct 404169 GCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATG 404110 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || || ||| | || ||||| || ||| | | || || ||||||||| Sbjct 404109 TTGAGCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCT 404050 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 || || || || || || ||||| || || || | || || || || || || || || Sbjct 404049 AAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGCCTCGGGG 403990 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || || || || || || || || || | ||| |||| || |||||| |||| Sbjct 403989 ACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACA 403930 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 |||||| ||| ||| | |||||| | || ||||||| | || | Sbjct 403929 GATGCCAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGAGAGCGATG 403870 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 ||||||||||| ||||| || ||||| | || | |||| | | ||| ||||| Sbjct 403869 GATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCAC 403810 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | || || ||||||||||| || | ||| || || || ||||| |||| ||||| || Sbjct 403809 AAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCT 403750 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 65920 || || | ||| | || || || || || |||| || ||||| || || | ||| | | Sbjct 403749 TTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGC 403690 Query 65921 GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTATACAAT 65978 || |||| || | | | || ||| ||| | |||||| |||||| | | Sbjct 403689 TGCT-GAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTT 403631 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 66038 | || ||||| || ||||| | ||| | || ||||| || | |||||||||| Sbjct 403630 C--TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGA 403573 Query 66039 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 66098 ||||| || || || |||||| ||||| || || || || ||||| || || ||| Sbjct 403572 GACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGC-ATA 403514 Query 66099 AATAAA-TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 | || ||||||| ||| || ||||| || || || ||||| || || || ||||| | Sbjct 403513 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTC 403454 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | ||| ||||||| || |||||||| ||||| | | || || | |||||| || Sbjct 403453 AAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCC 403394 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || ||||| | ||| | ||||||||| || |||||||||| ||| |||| | || || Sbjct 403393 ACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTT 403334 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 ||| | || ||||| |||| ||| ||||| ||| | | | || || | | || Sbjct 403333 GGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCTAC 403274 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 || || || || || || || || | ||||| | || | || || |||||||| Sbjct 403273 GCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 403214 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || || || || || ||||| || | || ||||| |||| || | ||| | || Sbjct 403213 TTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGT 403154 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||| || || || | || ||||| ||||| || ||||| || || || || |||||||| Sbjct 403153 TCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTA 403094 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 |||||| || || | || || || || || || || | || | ||| | ||| Sbjct 403093 CGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCAT 403034 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | || | | |||| ||| ||||||| || ||||| |||| ||| Sbjct 403033 GTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGT 402974 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || || || ||||||| || || |||| || ||||| || | |||||||| Sbjct 402973 CTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGCGGAGTTGAGGCG 402914 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 66757 || || | | ||| | | || || | || || || || || || Sbjct 402913 GTCTTTGTTCTCCAGAACGATGTGCAGCGTGTCTTTGGAGATCATGGGGGAGTGGCGTTG 402854 Query 66758 ATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 66817 || ||| |||| |||||| | | ||||||||||| || || || | || || || Sbjct 402853 GTTCAAAGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGT 402794 Query 66818 TTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTG 66877 |||||||| || ||||| || || || || || || | |||||||| || || |||| Sbjct 402793 CTCTTTGTGCAGGTTTGAGACAGCGATCCTCGCAGCGAGGATGGCATAGTCGGGGTGTTT 402734 Query 66878 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 66937 || || ||||| || || || ||||| || ||||| | || || || || || || Sbjct 402733 GGTCGTCAGCGTGGCAGCAATCTCAGCTGCTAGCGTGTCGAGCTCCACGGTGGTGACGCC 402674 Query 66938 ATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTT 66997 |||| | |||||||| |||||||| | || | | || || | | |||| ||| Sbjct 402673 GCTATACAGACCTTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAACTCAGAGTT 402614 Query 66998 TAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGACA 67049 | |||||| || || |||| |||||||| ||||||||||| ||||||||| Sbjct 402613 CAGGCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGACA 402562 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 |||| || ||||| || | ||| || || ||||| || ||||| || || || || | || Sbjct 1025018 TAGTGCCTGCATTGAACAGGGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAAT 1024959 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 |||| ||||||||||||| || || || || |||||| || || | || | ||| | Sbjct 1024958 TGTAAGTCTCAATAGCTGCATCGATGTCTTTTTTATGAATCCCAACCGATACCCTCATCA 1024899 Query 66574 ACATGTGCTGAGGTCTTTCA 66593 ||||||||| ||||| ||| Sbjct 1024898 GCATGTGCTGGGGTCTCTCA 1024879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657927754039400