Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq101 141 8e-29 >seq101 Length=1578606 Score = 141 bits (156), Expect = 8e-29 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 || || | || ||| ||||||| || || || || ||||||||||||||||| || || Sbjct 214025 AGTCCTGCGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGC 214084 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 ||||| || ||||||||||| || | |||||||||||| ||||||||||| || | Sbjct 214085 ACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCTCGCCGTCACAG 214144 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||| |||||||||| | |||| || || || |||||||| | | |||||| Sbjct 214145 ACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCCATGAGGGGGAGGTC 214197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427620715306800