Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2366 138 8e-28 >seq2366 Length=27598 Score = 138 bits (152), Expect = 8e-28 Identities = 219/309 (71%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 91798 TCATTTCCCTGTCTTTT-CCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGAC 91856 ||| ||||| | |||| ||| ||| ||||||| | ||||||||| || || | | | | Sbjct 3664 TCACTTCCC-GACTTTCACCTCCAAGGAGGACTGCGACATCATCACCGAGACCGCC-GCC 3607 Query 91857 AA-CTGGAACAAAGTGGCTTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATG 91915 || || || || |||||||||||||| ||| |||| || ||||| || || || ||| Sbjct 3606 AAGCTCGAGTGCAGCGGCTTCTACTGGGGCCCTCTGGGAGTGGAGGACGCCCACCGCATG 3547 Query 91916 CTGCGCAACTCGGCACTGGGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTG 91975 ||| || | | ||||||||||| ||||| || || ||| |||| ||||||||||| Sbjct 3546 CTGAAGGACGCCCCTCTGGGCAGCTTCCTCATCCGCGACAGCCGGCAGAAGGACGTCTTC 3487 Query 91976 TTCACGCTGTCGTATCACTCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGAC 92035 ||||||||||| || ||| | | ||| || ||||| ||| | || || |||| | Sbjct 3486 TTCACGCTGTCCTACCACGCCAAAAGCGGGCCGGTCAGCGTGCGCATCGACTACAGGCGG 3427 Query 92036 AAGCAATTTTCCTTGGCTGGGAGCAAACAGAGGTTTTCATCGGTCCTTCTCCTGTTGGAC 92095 || || || |||| || | | | | ||| || || || || ||| ||||| Sbjct 3426 CAGAGGTTCTCGCTGGCAGGCAACGAGCGCTCGTTCTCCACGCTCTTTGCCCTCTTGGAG 3367 Query 92096 CATTACATC 92104 ||||||||| Sbjct 3366 CATTACATC 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356104285533355