Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq345 500 1e-136 seq38 100 4e-16 seq1611 84.2 3e-11 >seq345 Length=614307 Score = 500 bits (554), Expect = 1e-136 Identities = 1302/1972 (66%), Gaps = 15/1972 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||||||||| || | || || | | | ||||| ||||| || ||||| | || Sbjct 404527 CTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 404468 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || ||||| || || || | || || ||||| || | || || Sbjct 404467 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCT 404408 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 404407 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 404348 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || ||||| | |||| ||| Sbjct 404347 GGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGAT 404288 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 || || || || || |||| | ||||| || |||| ||| | ||| | || | Sbjct 404287 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGT 404229 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || || || || | || || || ||| ||| || || || || || || Sbjct 404228 ACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTGG 404169 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | || | || || || ||||| | || |||| || ||||| || || |||| | | Sbjct 404168 CCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATGT 404109 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 |||| || || || | || ||||| || ||| | | || || |||||||||| Sbjct 404108 TGAGCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTA 404049 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 | || || || || || ||||| || || || | || || || || || || || || | Sbjct 404048 AACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGCCTCGGGGA 403989 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACAT 79564 || || || || || || || || || || | || ||||||| |||||| |||| Sbjct 403988 CCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACAG 403929 Query 79565 CCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACAG 79621 ||||| ||| ||| | || || | || ||||||| | |||| | Sbjct 403928 ATGCCAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGAGAGCGATGG 403869 Query 79622 ATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGA 79681 |||||||||| ||||| || ||||| | || | |||| | | || ||||| | Sbjct 403868 ATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACA 403809 Query 79682 GGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 79741 ||| || ||||| ||||| || | ||| || || || ||||| |||| ||||| || | Sbjct 403808 AGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTT 403749 Query 79742 TATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 79800 | || | ||| |||| || || || || |||| || ||||| || || | ||| | | Sbjct 403748 TGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGCT 403689 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAATC 79858 || |||| || | | | ||| ||| ||| | |||||| ||||| | || Sbjct 403688 GCT-GAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTC 403630 Query 79859 GTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACG 79918 || ||||| || ||||| ||||| | || ||||| |||| |||||||||| | Sbjct 403629 --TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAG 403572 Query 79919 ACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 79977 |||| || | || ||||| ||||| || || || || ||||| || || ||| Sbjct 403571 ACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGC-ATAG 403513 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || ||||||| ||| |||||||| || || || ||||| || || || ||||| | Sbjct 403512 AAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCA 403453 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||| ||||||| || |||||||| ||||| | | || |||| |||||| || Sbjct 403452 AACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCA 403393 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || ||||| | ||| | ||||||||| || |||||||||| ||| |||| | || ||| Sbjct 403392 CCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTG 403333 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 || | || ||||| |||| ||| ||||| ||| ||| | || || | | || Sbjct 403332 GAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCTACG 403273 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || || || || | ||||| | || | || || |||||||| Sbjct 403272 CCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCT 403213 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| || || ||||| || | || ||||| |||| || | ||| | ||| Sbjct 403212 TCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGTT 403153 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || || || || | || ||||| ||||| || ||||| || || ||||| ||||||||| Sbjct 403152 CCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTAC 403093 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || || | ||| || || || || || || | || | ||| | |||| Sbjct 403092 GTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCATG 403033 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| || | || | | |||| || ||||||| || || || |||| ||| Sbjct 403032 TGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGTC 402973 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || || || ||||||| || || |||| || ||||| || | |||||||| Sbjct 402972 TTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGCGGAGTTGAGGCGG 402913 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 80637 || || | | ||| | | || ||| | || || || || || || Sbjct 402912 TCTTTGTTCTCCAGAACGATGTGCAGCGTGTCTTTGGAGATCATGGGGGAGTGGCGTTGG 402853 Query 80638 TTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTT 80697 || ||| || | |||||| | | ||||||||||| || || || | || || || Sbjct 402852 TTCAAAGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGTC 402793 Query 80698 TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGT 80757 || ||||| || ||||| || || || || || || | |||||||| || || |||| Sbjct 402792 TCTTTGTGCAGGTTTGAGACAGCGATCCTCGCAGCGAGGATGGCATAGTCGGGGTGTTTG 402733 Query 80758 GTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCA 80817 || || ||||| || || || ||||| || ||||| | || || || || || || Sbjct 402732 GTCGTCAGCGTGGCAGCAATCTCAGCTGCTAGCGTGTCGAGCTCCACGGTGGTGACGCCG 402673 Query 80818 TTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTT 80877 |||| | |||||||| |||||||| | || | | || || | | |||| ||| Sbjct 402672 CTATACAGACCTTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAACTCAGAGTTC 402613 Query 80878 AAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGACA 80928 | |||||| || || |||| |||||||| ||||||||||| ||||||||| Sbjct 402612 AGGCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGACA 402562 >seq38 Length=2821725 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 |||| || ||||| || | ||| || || ||||| || ||||| || || ||||| | || Sbjct 1025018 TAGTGCCTGCATTGAACAGGGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAAT 1024959 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| ||||||||||||| || || || || |||||| || |||| || | ||| | Sbjct 1024958 TGTAAGTCTCAATAGCTGCATCGATGTCTTTTTTATGAATCCCAACCGATACCCTCATCA 1024899 Query 80453 ACATGTGCTGAGGTCTTTCA 80472 ||||||||| ||||| ||| Sbjct 1024898 GCATGTGCTGGGGTCTCTCA 1024879 >seq1611 Length=54692 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 97686 TCCGTGATAGGTATCGATGAAGGACAGTTCTTTCCAGA--CATTGTTGAATTCTGTGAGC 97743 |||||||| |||||||| |||| ||||||||||| || | |||| | ||||||||| Sbjct 54248 TCCGTGATTGGTATCGACGAAGCGCAGTTCTTTCCCGACGCGTTGTCG--TTCTGTGAGG 54305 Query 97744 GTATGGCAAACGAAGGAAAAATAGTTATAGTAGCCGCACTTGATGGGACATTTCAACGTA 97803 ||||| || | || |||| || || || || || |||||||| || |||||| | | Sbjct 54306 AAATGGCCAATGCGGGRAAAACTGTGATTGTGGCTGCGCTTGATGGAACTTTTCAAAGGA 54365 Query 97804 AACCGTTT 97811 | || ||| Sbjct 54366 AGCCATTT 54373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718001379547400