Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq345 471 6e-128 seq38 91.5 2e-13 seq558 86.0 8e-12 >seq345 Length=614307 Score = 471 bits (522), Expect = 6e-128 Identities = 1298/1976 (66%), Gaps = 23/1976 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||| || | || || | | | || || ||||| || ||||| | || Sbjct 404527 CTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 404468 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || |||||||| || || | || || ||||| || | || || Sbjct 404467 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCT 404408 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 404407 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 404348 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 || || || || ||||| || |||| || || || ||||| | || ||| | || Sbjct 404347 GGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCC--GTGCTTGGCG 404290 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNN 71345 || || || || || || |||| | | ||| || || | || Sbjct 404289 ATCTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTC 404231 Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 ||||| | || || || ||| | || || ||||| || || ||| Sbjct 404230 GTACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTT 404171 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 | || || || || || ||||| | || | || || ||||| || || |||| | Sbjct 404170 GGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGAT 404111 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 ||||| || || ||||| || ||||| || ||| | | || || |||||||| Sbjct 404110 GTTGAGCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGC 404051 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 ||| || || || || || ||||| || ||||| | || || || || || || || || Sbjct 404050 TAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGCCTCGGG 403991 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 | || || || || || || || || || || | ||| ||||||| |||||| ||| Sbjct 403990 GACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCAC 403931 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAAC 71702 | ||||| ||| ||| | | | || | || ||| ||| | || | Sbjct 403930 AGATGCCAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGAGAGCGAT 403871 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 ||||||||||| ||||| || ||||| | || || |||| | | || ||||| Sbjct 403870 GGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCA 403811 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 | || || ||||||||||| || | ||| || || || ||||| |||| ||||| || Sbjct 403810 CAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTC 403751 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || | || |||| || || || || |||| || ||||| || || | ||| | Sbjct 403750 TTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAG 403691 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT--GTGTATATAA 71939 | || |||| || | | | ||| ||| ||| | |||||| ||||| | Sbjct 403690 CTGCT-GAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCT 403632 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCA 71998 || || ||||| || ||||| ||| | ||| | || ||||| || || |||||||||| Sbjct 403631 TC--TCAAACTCCTCCCCCCA-GCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCA 403575 Query 71999 ATGACCACTC-TCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 ||||| || | | || | ||||| ||||| || || || || ||||| || || Sbjct 403574 GAGACCAGTCCTGGTTGCTC-TCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGC- 403517 Query 72058 ATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 72116 ||| || || ||||||| ||| |||||||| || || || ||||| || || || ||||| Sbjct 403516 ATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAA 403457 Query 72117 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTT 72176 | | | ||| ||||||| || |||||||| ||||| | | || || | |||||| Sbjct 403456 GTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTT 403397 Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 || || ||||| | ||| | ||||||||| || |||||||||| ||| |||| | || Sbjct 403396 GCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCC 403337 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| || ||||| |||| ||| ||||| ||| ||| | || ||| | | Sbjct 403336 GTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGC 403277 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || || || || || || || || || | ||||| | || | || || ||||| Sbjct 403276 TACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGAT 403217 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 ||| || || || || || ||||| || | || ||||| |||| || | ||| | Sbjct 403216 GCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATT 403157 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||||| || || || | || ||||| ||||| || ||||| || || ||||| ||||| Sbjct 403156 GGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATT 403097 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||||||||| || || | ||| || || || || || || | || | ||| | Sbjct 403096 GTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAG 403037 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| || | || | | |||| || ||||||| || ||||| |||| Sbjct 403036 CATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAG 402977 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || || || ||||||| || || |||| || ||||| || | || ||||| Sbjct 402976 AGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGCGGAGTTGAG 402917 Query 72657 TTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTT 72716 || || | | ||| || | || ||| | || || || || || || Sbjct 402916 GCGGTCTTTGTTCTCCAGAACGATGTGCAGCGTGTCTTTGGAGATCATGGGGGAGTGGCG 402857 Query 72717 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 || ||| || | |||||| | | ||||||||||| || || || | || || Sbjct 402856 TTGGTTCAAAGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTCTT 402797 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || || ||||| || ||||| || || || || || || || |||||||| || || || Sbjct 402796 GGTCTCTTTGTGCAGGTTTGAGACAGCGATCCTCGCAGCGAGGATGGCATAGTCGGGGTG 402737 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 || || || ||||| || || || ||||| || ||||| | || || || || || Sbjct 402736 TTTGGTCGTCAGCGTGGCAGCAATCTCAGCTGCTAGCGTGTCGAGCTCCACGGTGGTGAC 402677 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || |||| | |||||||| |||||||| | || | | || || | | |||| Sbjct 402676 GCCGCTATACAGACCTTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAACTCAGA 402617 Query 72957 GTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAACA 73011 ||| | |||||| || || |||| |||||||| ||||||||||| ||||| ||| Sbjct 402616 GTTCAGGCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGACA 402562 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 |||| || ||||| || | ||| || || ||||| || ||||| || || ||||| | || Sbjct 1025018 TAGTGCCTGCATTGAACAGGGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAAT 1024959 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 |||| ||||||||||||| || || || || ||| || || |||| || | ||| | Sbjct 1024958 TGTAAGTCTCAATAGCTGCATCGATGTCTTTTTTATGAATCCCAACCGATACCCTCATCA 1024899 Query 72536 ACATATGCTGAGGTCTTTCA 72555 ||| ||||| ||||| ||| Sbjct 1024898 GCATGTGCTGGGGTCTCTCA 1024879 >seq558 Length=349536 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| || || || ||||| || ||||| ||||| || Sbjct 126765 TAGGTGTCGATCAGCAGGCTGTACATCTCAGAGTGGATGTTCTCCATGGCGATCTGGAAG 126824 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| |||||||| || ||||| ||||| Sbjct 126825 CCGTAGAAACACCTGGCCTCAGTCACCTGGACTTC 126859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670889326486600