Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq345 165 1e-35 seq33 89.7 8e-13 seq38 86.0 9e-12 >seq345 Length=614307 Score = 165 bits (182), Expect = 1e-35 Identities = 376/561 (67%), Gaps = 20/561 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| ||| ||| || || || || ||||| ||| | ||||| | | || Sbjct 403319 ACCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACACCGCTCGC 403378 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| ||| | || || || | ||| | |||||||| |||||| Sbjct 403379 TACGTCGATCAAGGTGGCAACAAAAGACCCGGGGCCTTCGCCATGTACTTGGAGCCTTGG 403438 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || ||||| |||||||| | ||| || || ||| ||||| || ||| || Sbjct 403439 CATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAGGAGCAGAGA 403498 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || ||||| || ||| | || || ||||||||||||| || | Sbjct 403499 GCCAGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGAGAGC 403558 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| || ||||| ||| || || || || || ||| ||| Sbjct 403559 AACCAGG------ACTGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCTCGACGAGTGC 403612 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGA 97160 ||||| || ||||||||| |||||| | |||||| | || || || |||| Sbjct 403613 TGGGGGGAGGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGG--GA-GGGTGAAG 403669 Query 97161 CGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | | || | | || ||| | |||||| | | | ||| ||||| ||| Sbjct 403670 CGTGTGGTGAAAGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGACCGGA 403729 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGG 97276 || |||||||| | ||||| || |||| || | || |||||||| | | |||| Sbjct 403730 ACGCCGTACATGTTGTACAAAGA-CGCGTGCAACAGGAAGAGCAACCAGCAGAATCTGGG 403788 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336 |||||||||| || ||| |||||||||| | || || ||| || | |||||| Sbjct 403789 CACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACGAGGT 403848 Query 97337 GGCAGTTTGCGTTCTGGCATC 97357 |||||||||| ||||||||| Sbjct 403849 GGCAGTTTGCAATCTGGCATC 403869 >seq33 Length=3077319 Score = 89.7 bits (98), Expect = 8e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 |||| ||||| || || ||||| |||||||||||||| || || ||||| ||||||| Sbjct 3038976 GACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTTTGCTGCCATCT 3039035 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||||| |||||| | || |||||||| || ||||| Sbjct 3039036 ATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGAC 3039072 >seq38 Length=2821725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | | ||| ||| || || || || ||||| ||||||||| Sbjct 1026468 CTGTGGTACGCCATCATCGAGTCGCAGACAGAAACYGGGACGCCTTACATGCTCTACAAG 1026527 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 || || || | || |||||||| | || ||||||||||||| | ||| ||| Sbjct 1026528 GACGCCTGCAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAACCTG 1026587 Query 97299 TGCACGGAAATTGTAGAGTAC 97319 |||||||| || ||||||||| Sbjct 1026588 TGCACGGAGATCGTAGAGTAC 1026608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740783294396600