Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7633 138 3e-27 seq68 132 1e-25 seq2417 95.1 3e-14 seq29370 84.2 5e-11 >seq7633 Length=1847 Score = 138 bits (152), Expect = 3e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || | ||||| || || || | | ||||| || ||||| ||| Sbjct 1751 GTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTCCCA 1692 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || |||||||| || |||||||| ||||| ||||| ||||| Sbjct 1691 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCTTTC 1632 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || | |||| | | || || || ||||| || || || ||||||||||| || || Sbjct 1631 ACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATGGTCTTACCAGTGAGGGTC 1572 Query 104543 TTTACAAATATCTGCA 104558 || || || ||||||| Sbjct 1571 TTCACGAAGATCTGCA 1556 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || || || | | ||||| || ||||| ||| Sbjct 1523 GTTGATTCCTTCTGGATGTTGTAGTCTGACAGGGTCCGGCTATCTTCCAGCTGTTTCCCA 1464 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||||||| || |||||||| || |||||||| ||||| ||||| ||||| Sbjct 1463 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCTTTC 1404 Query 104483 AC 104484 || Sbjct 1403 AC 1402 >seq68 Length=2311667 Score = 132 bits (146), Expect = 1e-25 Identities = 158/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || | || || ||||| || || || | | ||||| || ||||| ||| Sbjct 1552565 GTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCA 1552506 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || ||||| || |||||||| || |||||||| ||||| ||||| || || Sbjct 1552505 GCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTC 1552446 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || | |||| ||| || | | || ||||| | || || ||||||||||| || || Sbjct 1552445 ACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTC 1552386 Query 104543 TTTACAAATATCTGCATTTTGTGTACAGTATTTA 104576 || ||||| ||||||| ||| ||| |||||| Sbjct 1552385 TTCACAAAGATCTGCA---TGTTTACCTTATTTA 1552355 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | | ||||| || | || || ||||| Sbjct 1552825 ATGCCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCG 1552766 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | | ||||| || ||||| ||||||||||| || ||||| || |||||| Sbjct 1552765 GACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGA 1552706 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || || | |||| |||||| | | || Sbjct 1552705 GGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCC 1552646 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||||||||| || || || ||||| |||| ||| Sbjct 1552645 ACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 >seq2417 Length=28051 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||||||||| |||||||| || || | || ||||| || |||||||||||||| || Sbjct 12762 TTCTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCCAGCTGTTTTCCAGCAAAGATC 12703 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 | |||||| ||||||||||| |||||| Sbjct 12702 AACCTCTGCTGATCAGGAGGGATTCCT 12676 >seq29370 Length=203 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || || ||||| || | |||| || || | || | ||| | || ||||| |||||| Sbjct 143 GAATCCTTCTGGATGTCGTAGTTGGACAGGGCTCGGCTATCTCCCAGCTGTTTCCCAGCA 84 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 ||||| ||||||| || |||||||| || |||||||| ||||| ||||| || || | Sbjct 83 AAAATCAGCCTCTTCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTCATG 24 Query 104486 TTTTCTACGGTATC 104499 | |||||||| || Sbjct 23 ATCTCTACGGTGTC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150959002982780