Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq101 116 3e-21 >seq101 Length=1578606 Score = 116 bits (128), Expect = 3e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| ||| ||||||||||||||| || || ||||| | |||||| Sbjct 214040 GCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGACCCATG 214099 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | |||| | |||||| |||||||| || ||||| |||| | ||||| |||||||| Sbjct 214100 T-CGGCCGAGCGCTGGTACAGCTGACAGGACAGCTCGCCGTCACAGACGTAGAACTGACA 214158 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 || | || ||| || || ||||| || ||| Sbjct 214159 CAGAGCGTGGCAGGGGGGCAGAGCCATGAGG 214189 Score = 111 bits (122), Expect = 1e-19 Identities = 140/189 (74%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| ||||| || || | |||||||| |||||||| || || || ||||| Sbjct 215425 CATGTCTTTGTATTCTGCACCAAAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTC 215484 Query 25833 TCCATCTTC----CCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGG 25888 || || || ||||| ||||||| || |||| ||| ||| ||| || |||| Sbjct 215485 CCCCTCCTCTCGGCCTGT----AAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGG 215540 Query 25889 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 25948 | ||||||||||| || || ||||| || ||||| |||| |||||| || || ||| ||| Sbjct 215541 CATCCCAGATCTTCACACCTTTCTCTGACAGCTCCTTGGCGTTTGTTGATCC-CTG-CGA 215598 Query 25949 ACCACAGCA 25957 | ||||| Sbjct 215599 CACGCAGCA 215607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340014128456805