Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq182 86.0 7e-12 seq1577 82.4 9e-11 >seq182 Length=1126799 Score = 86.0 bits (94), Expect = 7e-12 Identities = 199/294 (68%), Gaps = 12/294 (4%) Strand=Plus/Plus Query 37824 AACAAATATTAAAACATCATCGGCATAGAGTAATATTTTAGTTTCTTT--TCCTTTTCGA 37881 || ||| | ||||| |||||| ||||| || |||||| |||| | |||| | | Sbjct 611086 AAGAAAGAGTAAAATATCATCAGCATAAAGACTAATTTTATGTTCTATATTCCTATCCTG 611145 Query 37882 ATAATACCTTTAATGGCTGGATTTTTTCTAATAGAACAGGCTAAGGGCTCCATAGCTATT 37941 | || |||||||| ||| | ||| ||||||| | ||||| || || || |||| Sbjct 611146 A--ATGCCTTTAATATCTGCAGTTTGCCTAATAGCAGCGGCTAGTGGTTCAGTAAATATT 611203 Query 37942 ATAAATAATAATGGACTAAGAGGACAACCTTGTCTAATACCATTTT-TCAGTaaaa---a 37997 ||| ||| | || || || || ||||| || | || | | | | ||||| | Sbjct 611204 GCAAACAATGAGGGTGACAGTGGGCATCCTTGCCTGGTGCCCCTCTGTAAATAAAAGCTA 611263 Query 37998 aaaTATAGATTGTCTATCTCCGGTCCAAACACATGCTGAAGGTTTATCATATATTAATTT 38057 || ||| || | ||| | |||| |||||||||||| ||| | ||||| || ||| Sbjct 611264 GAAGATATATGAT-TATTT---GTCCTAACACATGCTGACGGTAAGTTATATAGTATTTT 611319 Query 38058 TACCCATGCAATAAAATTTTCTCCTAAACCAAATCTTTTTAGAGTTTCAAATAA 38111 || ||| ||||||||| | || ||||||||| | | | |||| ||||||| Sbjct 611320 TAACCAATTAATAAAATTATTCCCAAAACCAAATTTGTGCAAAGTTGCAAATAA 611373 >seq1577 Length=68207 Score = 82.4 bits (90), Expect = 9e-11 Identities = 216/323 (67%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 37833 TAAAACATCATCGGCATAGAGTAATATTTTAGTTTCTTTTCCTTTTCGAATAATACCTTT 37892 |||||||||||| ||||| || |||||| |||| | || | || ||||| Sbjct 47445 TAAAACATCATCAGCATAAAGACTAATTTTATGTTCTATGTTCTTACATTGTATGCCTTT 47386 Query 37893 AATGGCTGGATTTTTTCTAATAGAACAGGCTAAGGGCTCCATAGCTATTATAAATAATAA 37952 ||| ||| | ||| ||| || | | ||||| || || ||| || ||| | | | Sbjct 47385 AATATCTGCAGTTTGTCTTATTGCAGCTGCTAAAGGTTCAATAAAAATAGCAAACAGTGA 47326 Query 37953 TGGACTAAGAGGACAACCTTGTCTAATACCATTTTTCAGTaaaaaaaaTATAG---ATT- 38008 || ||| |||| || || ||| | || || | || | ||||| |||| ||| Sbjct 47325 GGGGGAAAGTAGACATCCCTGCCTAGTGCCTTTCTGTAG-ACAAAAACTATAAGATATTA 47267 Query 38009 GTCTATCTCCGGTCCAAACACATGCTGAAGGTTTATCATATATTAATTTTACCCATGCAA 38068 | ||| | |||| ||||||||||| ||| || ||||| || ||||| ||| || Sbjct 47266 GGTTATTT---GTCCTAACACATGCTGTTGGTGAATTATATAGTATTTTTAACCAATTAA 47210 Query 38069 TAAAATTTTCTCCTAAACCAAATCTTTTTAGAGTTTCAAATAAATATGATCG-TTTTAAA 38127 | |||| || ||| ||||||||| | | | ||| ||||||| || ||| |||| Sbjct 47209 TGAAATGTTTTCCAAAACCAAATTTATGCAAGGTTGCAAATAAGAAT-TTCGAGTTTACT 47151 Query 38128 AAATCAAAAGCTTTTTCAGCGTC 38150 |||||| |||||||| ||||| Sbjct 47150 CTATCAAATGCTTTTTCTGCGTC 47128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595650149406000