Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq195 91.5 8e-14 seq46 86.0 3e-12 seq178 84.2 1e-11 seq93 82.4 4e-11 seq7 82.4 4e-11 >seq195 Length=1028939 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 365039 AAAAAAAAACTTAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 364980 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 364979 CACGCTCTAACCAACTGAGCTAACCGGCC 364951 >seq46 Length=2716348 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| |||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 1646327 AATAAAAATATTTATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 1646268 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 1646267 CACGCTCTAACCAACTGAGCTAACCGGCC 1646239 >seq178 Length=1107740 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/91 (80%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11442 ATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||||||| | || |||||| | |||||||||| ||||||| ||||||||||| Sbjct 693289 ATAAAAAAAGCTGAACCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 693348 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||| |||| Sbjct 693349 ACCACGCTCTAACCAACTGAGCTAACCGGCC 693379 >seq93 Length=1773365 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 870245 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 870304 Query 11528 CC 11529 || Sbjct 870305 CC 870306 >seq7 Length=5755497 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4001325 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTGACCAACTGAGCTAACCGG 4001384 Query 11528 CC 11529 || Sbjct 4001385 CC 4001386 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261396277468660