Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq42 174 2e-38 seq414 154 2e-32 seq37 129 8e-25 >seq42 Length=2906915 Score = 174 bits (192), Expect = 2e-38 Identities = 214/292 (73%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 8687 GCCAACGGACA---CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTG 8743 |||| ||| || ||| || |||||| | ||||| || ||| | | || | ||| Sbjct 2307191 GCCATCGGGCAGGGCCCCTTCACGTTGTTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTG 2307250 Query 8744 ACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAG 8803 ||||| | || |||||| || |||||||||||||| |||||||| ||||||||||| Sbjct 2307251 ACGATGTCGAAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAG 2307310 Query 8804 ATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCA 8863 ||| ||| ||| ||||| |||||||| || |||||||||| ||| | || |||| Sbjct 2307311 ATGGGATTCCCCAGCAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTCTCC 2307370 Query 8864 CCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCC 8923 ||||||||||||||||| |||||||| ||||||| | || | ||| | |||||| || Sbjct 2307371 CCGAAGATGGCGTTGGGCCGGGGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACGGCG 2307430 Query 8924 TCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || || ||||| ||||| || || |||| Sbjct 2307431 TCCACGTCGCCGTACATCTCCTCCAGCAACGCAGCCATTTCTTTCTCCCCTG 2307482 Score = 114 bits (126), Expect = 2e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || | || || || ||| ||||||| ||| ||||| || Sbjct 2308819 TCACCAATCAGGATGAGCCGTGACGTTTGGAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 2308878 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| || || || |||| ||||||||| | ||||||||| || || |||||| Sbjct 2308879 ACTTCCTTCAGCACGTCACAGACTCGGTTGTGTTCACGGAGCCAGATGGTGGCATACATC 2308938 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| ||||| ||||| || || || || | ||| | || | Sbjct 2308939 ATGAGGCCGGGGACCAGRCCAAACGCCTCGTGGCCAACGGCAAAGCGCTGAGAGTCCAGG 2308998 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | || || ||| ||| | || |||||| || ||| | |||||||||| Sbjct 2308999 ACATGAGGCGGGTAGTGCATTTCGACACCGACATCCTTAACCAACGGGGGATACA 2309053 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | ||| ||||| || || || || || || || || | || | Sbjct 2309786 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCTGCGGCACAGGCGGAAGGGCTCGTGTG 2309845 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| | |||||| | |||||||||||| ||| ||||||| || ||||| | Sbjct 2309846 TAGTAGGACAAGTTGGAGTAGGCTTCCCAGCTTTTGTAACCGTAGTCGGCATTGTAAGTT 2309905 Query 10407 GGAGGGCTGTCAATCAAATCGGATC 10431 ||||| ||||| ||||| | ||||| Sbjct 2309906 GGAGGACTGTCGATCAAGTGGGATC 2309930 >seq414 Length=443506 Score = 154 bits (170), Expect = 2e-32 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| ||| || || || | ||| | | |||||||| | Sbjct 420191 GGACACCACTTGGTGTTGAGACACACCAGCTTCTTCAGAGTGGACGTTTTGACGATGTCG 420132 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| || || |||||||||||||| |||||||| | |||||| |||| ||| Sbjct 420131 AAGCCCGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGTTG 420072 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| |||||||| ||||| || ||||| |||| ||| | ||||||||||| || || Sbjct 420071 CCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATA 420012 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||||||||||| || |||| || || |||| ||| ||||||| ||| ||||||||| Sbjct 420011 AAGTTGGGACGGGTTTTCTCCAGCATGAGGCCGGGGTAAAACTCCAGAGCGTCGATGTCT 419952 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 419951 CCGTAGAG 419944 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || |||||||||||||||| || ||||| || || || ||||| ||| |||||| Sbjct 416970 TCACCGATAATGATGAGTCTGGTAGTCTGGAAAAGCTGCTCGTCGTCCCAGGTGGGATGT 416911 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| ||||| || || || ||||||||||| ||||||||||||| || |||||||| Sbjct 416910 TCTGCCTTCAGGACGTCACAGACTCTGTTGTGCTCCCTGAGCCAGACGGTGGCGTACATG 416851 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 |||| || |||| |||||| || |||| || |||| ||||| || Sbjct 416850 GTGAGGCCCGGCAGCAGGCCGAACACCTCCTGCCCGATGGCCAGGCG 416804 >seq37 Length=2935640 Score = 129 bits (142), Expect = 8e-25 Identities = 182/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| |||||||| || |||||||| ||||| || |||||| ||| |||||| Sbjct 1370615 TCACCGATGATGATGAGGCGTGTGGTCTGGAACAGCTGCTCGTCATCCCAGGTGGGATGT 1370556 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| |||||| | || || || | ||| || ||||||||||| | || ||||||||| Sbjct 1370555 TCTGCTTTCAGGATGTCACAGACACGGTTATGCTCCCTGAGCCACAGCGTGGCGTACATC 1370496 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 | |||||| | ||| ||||| |||| ||||||| |||| | | | |||| Sbjct 1370495 CCCAAACCAGGAAGCAGTCCAAACACCTCCTGACCGATGGCCATCTGACTCTGGACGGGG 1370436 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | |||||| ||| |||| || | |||| || ||||| ||| |||| || Sbjct 1370435 ACGTTGGGAGGGTAGCTCATCCTGACGGGAGCATCAACAACGGAGGGAGGAAACATCTCT 1370376 Query 9850 CCGTCAATAATCTGAT 9865 || ||||| | ||||| Sbjct 1370375 CCATCAATCAACTGAT 1370360 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 8713 ACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAA 8772 |||||| || || | ||| ||| || ||||| | || || || | || || || Sbjct 1375194 ACAGACCAGCTTCTTTAGAGTGGCAGAGTTTACGATGTCGAAGCCAACTTTGCCTCCAAA 1375135 Query 8773 GGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8832 ||||||||| ||||||||| | || || |||||| |||| ||||||| || ||||| || Sbjct 1375134 GGTGCTGGGCTTCCAGTAATCTGGAGAACAGATGGGGTTCCCCATGAGACCCTTGAGAGA 1375075 Query 8833 AAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8892 ||| || || |||| || | ||||| || || || | |||| |||| | || || Sbjct 1375074 AAAGGGGGCGCCCATTTCCACCATGCTTTCTCCAAATACGGCGCCCTGACGCGTTTTCTC 1375015 Query 8893 CACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || || ||||||| || || || | | |||||||| ||||| || Sbjct 1375014 CAGCAGTAATCCGGGATAAAATTCAAGCGTGTCGATGTCACCGTACAG 1374967 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||||||||| ||||| || || || || | |||||| || || |||| || | | Sbjct 1369662 TCACCTTTGACCCCCAGAGGCGTGGGGCAGTCTTCAGGAACAGGGGGCAGAAGCCGGGTG 1369603 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||| || ||| || ||| ||||||||| |||| |||| | | ||||||| | Sbjct 1369602 TAGTAGCTCAGGTTGTAGTAAGATTCCCAGCTCAGGTAGCCGTATTTTGAGTTGTAGGTT 1369543 Query 10407 GGAGGGCTGTCAATCAA 10423 ||||||||| ||||| Sbjct 1369542 GGAGGGCTGGGTATCAA 1369526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708261007360400