Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq68 140 3e-28 seq7633 111 1e-19 seq13 86.0 6e-12 seq74 82.4 7e-11 >seq68 Length=2311667 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94787 CTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTG 94846 |||| |||| |||| ||||| || |||||||| | | ||| || ||| || || Sbjct 1552589 CTCAGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTC 1552530 Query 94847 TTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCT 94906 | ||| ||||||||||| || |||| || | ||| ||||| || ||||| || ||| Sbjct 1552529 CGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCT 1552470 Query 94907 TCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATC 94966 ||||| || | || || ||||| |||| | | |||||| |||| || || || | | Sbjct 1552469 TCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACC 1552410 Query 94967 GTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 |||||||| || ||||| || || |||||||||||||||||| |||| Sbjct 1552409 GTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTTTAC 1552363 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| | |||||||| | | ||| || ||| | Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGAC 1552763 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||||||||| || |||| || | ||| ||||| || ||||| Sbjct 1552762 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552703 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| |||| | | || ||| |||| || || Sbjct 1552702 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACC 1552643 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || ||||| || || ||||||||||||| ||||| Sbjct 1552642 TCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCATGC 1552594 >seq7633 Length=1847 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| |||| |||| ||| | || |||||||| || | || || ||| | Sbjct 1781 CCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGAC 1722 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||||||||| || |||| || | || ||||| || ||||| Sbjct 1721 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1662 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || || || || | | | ||||| || | || || Sbjct 1661 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACC 1602 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||||||| || ||||| || || ||||| |||||||||| || Sbjct 1601 TCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCACGC 1553 >seq13 Length=4660326 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| | |||| |||| || ||| || | || ||||| || ||||| || |||||||| Sbjct 4660073 ATCTTTCAGCCGTTTGCCAATAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTT 4660014 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| |||| | | |||||| | | || || || | ||||| Sbjct 4660013 GTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCATTGAGCTCCACCTCCAGGGTGAT 4659954 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTAC 95013 ||||||||||| ||||| || | |||||||||| |||| Sbjct 4659953 AGTTTTTCCAGTGAGAGTCTTGATTTTGATCTGCATGTTTAC 4659912 >seq74 Length=2059002 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||| ||||| | |||||| |||||||| ||| |||||| | | || || || Sbjct 1725007 ACCTTCCTTGTCTTGAATTTTCGCCTTGACATTTTCGATGGTGTCACTGGGTTCAACCTC 1724948 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||||||||| || || | |||||||||||||||||||| Sbjct 1724947 AAGGGTGATGGTTTTCCCCGTTAATGTTTTCACAAAGATCTGCAT 1724903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448124295582600