Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq408 206 4e-49 seq340 197 2e-46 seq212 185 1e-42 seq110 178 2e-40 seq344 150 3e-32 >seq408 Length=440226 Score = 206 bits (228), Expect = 4e-49 Identities = 209/273 (77%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || ||||||||||| || || Sbjct 9378 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGRATCACCAAGCCCGCCAT 9319 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 9318 CCGTCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 9259 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| |||||| ||||||| ||| || |||| |||||| || ||| ||||| Sbjct 9258 CCGTGGTGTGTTGAAGGTCTTCCTGGAGAATGTCATCCGTGATGCCGTCACCTACACCGA 9199 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| |||||| |||||||| | ||||| || | || | || || Sbjct 9198 GCATGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTCAAGAGACAGGG 9139 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 |||| | || || || ||| ||||| |||| Sbjct 9138 TCGTACTCTGTACGGCTTCGGAGGTTAAACTTC 9106 >seq340 Length=642261 Score = 197 bits (218), Expect = 2e-46 Identities = 206/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| || ||||||||||| || || Sbjct 182832 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCAT 182891 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || |||||||||||||| |||| || || |||| || |||| Sbjct 182892 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGGATCTCCGGCCTGATCTACGAGGAGAC 182951 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| ||||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 182952 CCGCGGTGTGTTGAAGGTCTTCCTGGAGAACGTCATCCGTGATGCCGTCACCTACACCGA 183011 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || | || | || || Sbjct 183012 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTSTACGCTCTCAAGAGACAGGG 183071 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || || ||| ||||| || Sbjct 183072 TCGTACTCTGTACGGCTTCGGAGGTTAAACT 183102 >seq212 Length=975815 Score = 185 bits (204), Expect = 1e-42 Identities = 204/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||||||||| ||||| Sbjct 184886 CGCAAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 184827 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 184826 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 184767 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| |||||| | || || ||| ||| |||| ||| || || ||| ||||| Sbjct 184766 CCGCGGTGTGTTGAAGGTGTTTCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 184707 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | || || || |||| | || || Sbjct 184706 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGG 184647 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 || | | || || || ||| ||||| ||| Sbjct 184646 TCGCACTCTCTACGGCTTCGGAGGTTAAACTT 184615 >seq110 Length=1683906 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || ||||||||||| |||||||||||||| || || Sbjct 451527 CGCTAAGCGGCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCAT 451586 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || ||||| ||||| |||| || || |||| || |||| Sbjct 451587 CCGCCGCCTGGCTCGCCGCGGGGGAGTGAAGCGCATCTCGGGTCTGATCTACGAGGAGAC 451646 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| ||||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 451647 CCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 451706 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| ||||||| | || || || |||| | ||||| Sbjct 451707 GCACGCCAAGAGGAAGACCGTCACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAAGG 451766 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || ||| ||||| Sbjct 451767 CCGTACCCTGTACGGCTTCGGAGGTTAA 451794 >seq344 Length=691188 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || || |||||||| || ||||| ||||| || || Sbjct 215935 CGCTAAGCGGCACCGTAAAGTCCTCCGTGACAACATCCAGGGGATCACTAAGCCCGCCAT 215876 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||||||| || ||||| |||||| |||| || || |||| || |||| Sbjct 215875 CCGCCGTCTGGCTCGTCGCGGCGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGAC 215816 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| ||| || || ||| || || Sbjct 215815 CCGCGGCGTCCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACGGA 215756 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 215755 GCACGCCAAGAGGAAGACGGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGGCAGGG 215696 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || |||||| ||||| Sbjct 215695 TCGAACCCTGTACGGCTTTGGAGGTTAA 215668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79047967366005