Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq345 489 2e-133 seq38 91.5 2e-13 >seq345 Length=614307 Score = 489 bits (542), Expect = 2e-133 Identities = 1297/1973 (66%), Gaps = 17/1973 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||||||||| || | || || | | | ||||| ||||| || ||||| | || Sbjct 404527 CTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCT 404468 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || ||||| || || || | || || ||||| || | || || Sbjct 404467 CTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCT 404408 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 404407 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 404348 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || ||||| | |||| | ||| Sbjct 404347 GGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGAT 404288 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | ||| | | Sbjct 404287 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGG--CGTCTTGTCCCACATGTCG 404230 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || | ||| || ||| ||| | || || ||||| || || || Sbjct 404229 TACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTG 404170 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 | || || || || || ||||| | || |||| || ||||| || || |||| | Sbjct 404169 GCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATG 404110 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || || ||| | || ||||| || ||| | | || || ||||| ||| Sbjct 404109 TTGAGCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCT 404050 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 || || || || || || ||||| || || || | || || || || || || || || Sbjct 404049 AAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGCCTCGGGG 403990 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || || || || || || || || || | ||| |||| || |||||| |||| Sbjct 403989 ACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACA 403930 Query 62841 TCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACA 62897 |||||| ||| ||| | ||| || | || ||||||| | || | Sbjct 403929 GATGCCAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGAGAGCGATG 403870 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 ||||||||||| ||||| || ||||| | || | |||| | | ||| ||||| Sbjct 403869 GATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCAC 403810 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | || || |||||||| || || | ||| || || || ||||| |||| ||||| || Sbjct 403809 AAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCT 403750 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 63076 || || | ||| | || || || || || |||| || ||||| || || | ||| | | Sbjct 403749 TTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGC 403690 Query 63077 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT--AGTGTATACAAT 63134 || |||| || | | | || |||| ||| | |||||| |||||| | | Sbjct 403689 TGCT-GAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTT 403631 Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 | || ||||| || ||||| | ||| | || ||||| || | |||||||||| Sbjct 403630 C--TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGA 403573 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||||| || || || |||||| ||||| || || || || ||||| || || ||| Sbjct 403572 GACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGC-ATA 403514 Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || || ||||||| ||| || ||||| || || || ||||| || || || ||||| | Sbjct 403513 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTC 403454 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | ||| ||||||| || |||||||| ||||| | | || || | |||||| || Sbjct 403453 AAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCC 403394 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 || ||||| | ||| | ||||||||| || |||||||||| ||| |||| | ||||| Sbjct 403393 ACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTT 403334 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 || | || |||||||||| ||| ||||| ||| ||| | || || | | || Sbjct 403333 GGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCTAC 403274 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || || || || || | ||||| | || | ||||| ||||| || Sbjct 403273 GCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 403214 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || ||||| || || ||||| || | || ||||| |||| || | ||| | || Sbjct 403213 TTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGT 403154 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| || || || | || ||||| ||||| || ||||| || || || || |||||||| Sbjct 403153 TCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTA 403094 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 |||||| || || | || || || || || || || | || | ||| | ||| Sbjct 403093 CGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCAT 403034 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| || | || | | |||| ||| ||||||| || ||||| |||| ||| Sbjct 403033 GTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGT 402974 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || || || ||||||| || || |||| || ||||| || | |||||||| Sbjct 402973 CTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGCGGAGTTGAGGCG 402914 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 63913 || || | | ||| || | || ||| | || || || || || || Sbjct 402913 GTCTTTGTTCTCCAGAACGATGTGCAGCGTGTCTTTGGAGATCATGGGGGAGTGGCGTTG 402854 Query 63914 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 63973 || ||| || | |||||| | | ||||||||||| || || || | || || || Sbjct 402853 GTTCAAAGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCGCTGAACACCTTCTTGGT 402794 Query 63974 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64033 || ||||| || ||||| || || || || || || || |||||||| || || |||| Sbjct 402793 CTCTTTGTGCAGGTTTGAGACAGCGATCCTCGCAGCGAGGATGGCATAGTCGGGGTGTTT 402734 Query 64034 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 || || ||||| || || || ||||| || ||||| | || || || || || || Sbjct 402733 GGTCGTCAGCGTGGCAGCAATCTCAGCTGCTAGCGTGTCGAGCTCCACGGTGGTGACGCC 402674 Query 64094 ATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGTT 64153 |||| | ||||| || |||||||| | || | | || || | | || | ||| Sbjct 402673 GCTATACAGACCTTGGATCACCTTCATGGTGATCTGAGCCGGGTCCACAAACTCAGAGTT 402614 Query 64154 TAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGACA 64205 | |||||| || || |||| |||||||| ||||||||||| ||||||||| Sbjct 402613 CAGGCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCGAACATGACA 402562 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 |||| || ||||| || | ||| || || ||||| || ||||| || || || || | || Sbjct 1025018 TAGTGCCTGCATTGAACAGGGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAAAT 1024959 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63729 |||| ||||||||||||| || || || || |||||| || || | || | ||| | Sbjct 1024958 TGTAAGTCTCAATAGCTGCATCGATGTCTTTTTTATGAATCCCAACCGATACCCTCATCA 1024899 Query 63730 ACATGTGCTGAGGTCTTTCA 63749 ||||||||| ||||| ||| Sbjct 1024898 GCATGTGCTGGGGTCTCTCA 1024879 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 ||||| |||||||||||| || || ||||| | || | || |||||||||| || || Sbjct 1026148 CACTCTTTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAGATCTCTGGCCCTCTG 1026089 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||| || || || || ||||| || || || || || | | | || ||||||||||| Sbjct 1026088 TTCTTCTTTCCCGGTGTTCTTCTTCAGGTCCAGAAATTCAAACACGTCTGAATGCCACGG 1026029 Query 63335 TTCCAAGTATATGGC 63349 |||| ||| || || Sbjct 1026028 CTCCAGGTACATAGC 1026014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622715268970600