Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq345 210 6e-49 >seq345 Length=614307 Score = 210 bits (232), Expect = 6e-49 Identities = 580/873 (66%), Gaps = 26/873 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||| | || || |||| ||||| | | || | || Sbjct 403019 GAGCGCCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCACGGGACCGACATCGAA 403078 Query 363508 GCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTATTCACGCACGCCACGCCAA 363565 || || || || || || || || || || | ||| ||||| |||||| | || | Sbjct 403079 GCGGCCATCGAGACGTACAATCTGCTGTCAGAGAA-GTGG-TTCACTCACGCCTCTCCGA 403136 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | ||| || ||||| | || ||| |||| ||||| | || |||| Sbjct 403137 CTCTCTTCAACGCAGGAACCAATCGGCCGCAGCTGTCCAGCTGCTTCTTGCTCGCCATGA 403196 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 | ||||| |||||| || |||| ||||| || ||| | || || || ||||||||| Sbjct 403197 AAGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAGT 403256 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTCGC 363744 ||| || || ||||| ||| || || | | | | ||| | || ||||| | Sbjct 403257 CTGCCGGAGGCATTGGCGTAGCGGTCAGCTGCATCAGATCCACTGGG-AGCTACATCGCC 403315 Query 363745 GGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || || | |||| |||| || ||||||||||||||||| | || | |||| || || Sbjct 403316 GGTACCAACGGGA-ACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACACCGC 403374 Query 363804 GAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 | |||||||| || ||||| | |||| | ||||| || || ||||| | ||| Sbjct 403375 TCGCTACGTCGATCAAGGTGGCAACAAAAGACCC--GGGGCCTTCGCCATGTACTTGGAG 403432 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 ||| ||| || | ||||| || || ||||| ||| ||||| || || ||||| Sbjct 403433 CCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAGGAG 403492 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | | || | || || |||||||| || ||| | | |||| || |||||||| ||| Sbjct 403493 CAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTG 403552 Query 363982 GAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT 364040 ||| ||| | || | |||| || | || || |||| ||||| || || ||| Sbjct 403553 GAGAGCAACCAGGACT-GGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCTCGACGAGTG 403611 Query 364041 ATGGGGTGACGACTATGTT--GCTCTATACGAAA----AGTATGAATCGGAGGGAAAGGC 364094 ||||| || || | || ||| || || | | || | ||| |||||| | || Sbjct 403612 CTGGGGGGAGGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAG-GGAGGGTGAAGC 403670 Query 364095 TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGAC 364154 || || || ||| |||| |||| |||||||| || || |||| ||||| Sbjct 403671 GTGTGGTGAAA-----GCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGAC 403725 Query 364155 AGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 ||||| || || |||||||||||||| |||||||| | ||| |||||||||| | || Sbjct 403726 CGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCT 403785 Query 364215 TGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGA 364274 || || || || |||||| | || || ||| | | ||||||||| ||||||| Sbjct 403786 GGGCACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACGA 403845 Query 364275 GACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 | || || || || || || || ||||| || Sbjct 403846 GGTGGCAGTTTGCAATCTGGCATCCATCGCTCT 403878 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 ||||| ||||||||||| || || || |||||||| || |||||||||| | |||| || Sbjct 404324 GCGCCGATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCG 404383 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || |||||||| || | | | || || Sbjct 404384 TACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTCCAGATCGTCAACCCT 404443 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || |||| || || | || | ||||||||| || ||||||||| | | Sbjct 404444 CATCTGCTCAAAGACCTGACGGAGAGGGGGCTGTGGAACGAGGAGATGAAGAACAAGCTG 404503 Query 364930 ATCGCC 364935 |||||| Sbjct 404504 ATCGCC 404509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302856213791870