Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq345 302 4e-77 seq226 118 1e-21 seq38 114 1e-20 seq2815 104 2e-17 seq7633 84.2 2e-11 >seq345 Length=614307 Score = 302 bits (334), Expect = 4e-77 Identities = 949/1444 (66%), Gaps = 46/1444 (3%) Strand=Plus/Minus Query 145124 GACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAAT 145183 |||||||| ||||||||||| || ||||| | || |||||||| ||||| || | Sbjct 404373 GACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGG 404314 Query 145184 GAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAA 145243 || | || ||||||||| ||| | ||||| ||| ||| ||||| || | Sbjct 404313 CTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCA 404254 Query 145244 GTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGA 145303 |||||| || |||||||||||||||||||| |||||| |||| |||| ||||| Sbjct 404253 GTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCG 404194 Query 145304 AAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAGCGCCGA 145361 | | ||| |||| ||||| | ||||||||||| || |||||||||||| || Sbjct 404193 TACGTCTCGTAGGGGCCC--AGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGT 404136 Query 145362 AATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCA 145421 | || || ||||| || || ||||||||||| || || || || | || Sbjct 404135 AGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCAAAGGGGT 404076 Query 145422 TGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTT 145481 |||| || | || || || || | ||||| | ||| | ||||| |||| || Sbjct 404075 AACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGC 404016 Query 145482 TCATGTTGCTCATC-----CTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTT 145536 ||||| |||| |||| ||| | ||| | | |||| || || || || Sbjct 404015 GTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTT-GATT----TCAATGATCTT 403961 Query 145537 ATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCAAACCGA 145594 ||||||||| |||| || || || | |||| | |||| ||||||| | | Sbjct 403960 GTTCAAGTTTTTGACTATCACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCATAA-GT 403904 Query 145595 GC-CTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 || ||| ||| ||| | |||| ||||| || |||| ||| ||||||||| Sbjct 403903 GCGCTCAGGCGTGACGT-ACA--TGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCAC 403847 Query 145654 CTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 ||| |||||| | |||||| |||| ||| | |||||| ||||| || |||||||| || Sbjct 403846 CTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCC 403787 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 |||||| ||||| || || ||||||||||||||||| ||||| | ||||||||| || Sbjct 403786 CAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCC 403727 Query 145774 AGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAA--GTCCTGCGCACGCACCTGCTGC 145831 |||||| ||| | ||| | ||| || ||| | ||| || |||| || Sbjct 403726 GGTCTCCGTCTGGGACTCTATGAT--GGCGTACCAAAGCTGCTGAGCTTTCACCACACGC 403669 Query 145832 TGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGC 145889 | | | |||| |||| |||||| | |||| |||| ||||||| | || ||| Sbjct 403668 T-TCACCCTCCCTTCCTTC-TCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGC 403611 Query 145890 AATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGA 145949 | ||| || || ||||||| ||||||||||||||| ||||| | |||| | | Sbjct 403610 ACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCA 403551 Query 145950 CGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCA 146007 | |||| ||| |||| || || | |||||| || || | | ||| | || || ||| Sbjct 403550 CTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGC- 403492 Query 146008 ATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGG 146067 ||||| || |||| ||||| | || | | | | ||| ||||| || Sbjct 403491 -TCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGG 403433 Query 146068 TTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGACGTAC 146124 || | || | ||||| ||| || | || |||||||| || || |||| || | Sbjct 403432 CTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGC 403373 Query 146125 CATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTT 146184 ||||||| | || | || |||||| | | ||| ||| ||||| ||| | Sbjct 403372 GGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGC 403313 Query 146185 TATTCTGGTGCCGCGGGAGCGCACGCA-ATGAACATTCACGCCGAGACCGCCGCCGTACT 146243 || | | || ||| | | ||| ||| | | ||||| | || ||| | ||| Sbjct 403312 GATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCT-ACGCCAATGCCTCCGGCAGACT 403254 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAA 146303 |||| || |||||| | || || ||||||||||| || ||||| ||| | | Sbjct 403253 TGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCA 403194 Query 146304 TGCCGAGCAGAAAGCACGAGCACATCTGCG--CCATCGGCGTCCCCGCCGAGAACAACGT 146361 || |||||| ||||| | ||| ||||| | || | || || || ||| | || Sbjct 403193 TGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTG--GTTCCTGCGTTGAAGAGAGT 403136 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGTCTT 146420 ||| ||||| || || || || || | || || ||||| ||||| || ||| Sbjct 403135 CGGAGAGGCGTGAGTGAACCACTTCTCTG-ACAGCAGATTGTACGTCTCGATGGCCGCTT 403077 Query 146421 GAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCG 146480 |||||| || || || || | || || | |||||||||||| || || ||||| | Sbjct 403076 CGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGG 403017 Query 146481 CCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAAATT 146540 |||| | || || || | || |||| | |||||| || ||| ||||||| || | Sbjct 403016 CCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGT 402957 Query 146541 TGTA 146544 |||| Sbjct 402956 TGTA 402953 >seq226 Length=808630 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | || | || |||||||| || |||||||| ||| | Sbjct 361803 CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 361744 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | | ||||||||| |||||| Sbjct 361743 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 361684 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 361683 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 361624 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || |||||||||||| Sbjct 361623 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 361576 >seq38 Length=2821725 Score = 114 bits (126), Expect = 1e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| ||||| |||||||||| ||||| |||||||| | Sbjct 1026609 TGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGT 1026550 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| |||||||||||||||||||| || || || || ||||| Sbjct 1026549 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTCTGTCTGCG 1026490 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 1026489 ACTCGATGAT 1026480 >seq2815 Length=13304 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||| || | || | ||| ||| |||| || |||||||||||| Sbjct 3023 GCCACCCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGA 2964 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || |||||||||| ||| |||| | | ||||||||| ||||| Sbjct 2963 CAGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGG 2904 Query 131127 GATTCCTTCTTTGTC 131141 ||||||||| ||||| Sbjct 2903 GATTCCTTCCTTGTC 2889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 131021 GCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGT 131080 |||| || | || | ||| ||| |||| || |||||||||||| || |||||| | Sbjct 331 GCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCAT 272 Query 131081 CCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGT 131140 | || |||||||||| ||| |||| | | ||||||||| |||||||||||||| |||| Sbjct 271 CTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGT 212 Query 131141 C 131141 | Sbjct 211 C 211 >seq7633 Length=1847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | ||||||||| || | || | ||| || ||||| || |||| ||| ||| Sbjct 1782 GCCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGA 1723 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || ||||| || || || | || | | ||||||||| ||||| Sbjct 1722 CAGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 1663 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG-CTCCACAGTATCGGTGGACTCGA 131185 ||| ||||||||||| ||| || |||| ||| ||| | | || || ||| | Sbjct 1662 GATGCCTTCTTTGTCCTGGATCTT-AGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCA 1604 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || | || | ||| ||||| || || || || ||||| ||||||| Sbjct 1603 CCTCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||||||||| || | || | ||| || ||||| || |||||||| || Sbjct 1554 GCCACCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGA 1495 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || ||||| || || || | || | | ||||||||| ||||| Sbjct 1494 CAGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 1435 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||||||||| Sbjct 1434 GATGCCTTCTTTGTC 1420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471837063734400