Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq226 113 4e-20 seq68 109 4e-19 >seq226 Length=808630 Score = 113 bits (124), Expect = 4e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| || || ||||||||||| || ||||||||||||| || ||| | | || Sbjct 361789 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 361730 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| ||||| ||| | ||| || ||||| Sbjct 361729 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 361670 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | ||||| | ||||||| |||| ||||||| Sbjct 361669 CTGGATCTTGGC--CTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 361612 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || || || ||||||||||||||||| || Sbjct 361611 GTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 >seq68 Length=2311667 Score = 109 bits (120), Expect = 4e-19 Identities = 174/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| || | ||| |||| ||||| || || ||||| | ||||||||||||| Sbjct 1552594 CCCTCCTC--AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGA 1552537 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | || |||| |||||||| ||| |||| || | ||| ||||| ||| Sbjct 1552536 CAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGG 1552477 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| ||||| || || || || |||||| | | ||||| ||| ||||| Sbjct 1552476 GATGCCTTCTTTTTCCTGGATCTTAGC--CTTCACGGTCTCTATGGTGTCACCGTGCTCC 1552419 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAGCCT 16945 ||||| |||||||| || || || || || || ||||| |||||||| || || ||| Sbjct 1552418 ACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT-TA-CCT 1552361 Query 16946 TATT 16949 |||| Sbjct 1552360 TATT 1552357 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| | || ||||| | ||||||||||||| | Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGAC 1552763 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| |||||||| ||| |||| || | ||| ||||| ||| Sbjct 1552762 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552703 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| ||||| || || || || |||||| | | || || ||| ||||| Sbjct 1552702 ATGCCTTCTTTTTCCTGGATCTTAGC--CTTCACGGTCTCTATGGTATCACCGTGCTCCA 1552645 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || || || || || ||||| |||| ||| Sbjct 1552644 CCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404940951157150