Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq319 123 2e-23 seq571 122 6e-23 seq279 122 6e-23 seq153 98.7 7e-16 >seq319 Length=759719 Score = 123 bits (136), Expect = 2e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | |||||| || ||||| ||||||||||| ||||||||| |||||||| Sbjct 409507 ACCCGACTAAGTTTTTCGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATACCAAAAACG 409566 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| || ||||| || | | ||||||||||||| | || || || | Sbjct 409567 ATCGTTACATCGTCAAYGGATCCCACGAGGCGAACAAGCTGCAGGACATGCTGGATGGGT 409626 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || |||||||||||| || || || ||||| || || || || Sbjct 409627 TCATCAGAAAATTTGTGCTGTGTGCCGAGTGTGACAACCCTGAAACTGACCT 409678 >seq571 Length=348586 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 283535 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCGT 283476 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||| ||||||||||||| Sbjct 283475 TCATCCATTCATGCGCGTCACAAATTAGATGACGA 283441 >seq279 Length=715161 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||| | Sbjct 590506 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGGTAGGGACAGTGGGAATCTCAT 590447 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 590446 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 590412 >seq153 Length=1149359 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||| Sbjct 944008 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCCTCTATCGGTCTCGT 944067 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 944068 GACGGTATTTAGCCTTA 944084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334825612596335