Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq107 96.9 7e-15 seq597 91.5 3e-13 seq483 91.5 3e-13 seq366 91.5 3e-13 seq116 91.5 3e-13 seq71 91.5 3e-13 seq117 89.7 1e-12 seq99 89.7 1e-12 seq98 89.7 1e-12 seq351 87.8 4e-12 >seq107 Length=1797769 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 576677 AGCCCGGCTAGCTCAGTCGGTAGAGCATTAGACTCTTAATCTCAGGGTCGTCGGTTCGAG 576618 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 576617 CCCCACATTGGGC 576605 >seq597 Length=260031 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 103846 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 103905 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 103906 CCCCACGTTGGGC 103918 >seq483 Length=402844 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 288579 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 288520 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 288519 CCCCACGTTGGGC 288507 >seq366 Length=622136 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 167485 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 167426 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 167425 CCCACGTTGGGC-GAAG 167410 >seq116 Length=1498688 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1191673 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1191614 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1191613 CCCCACGTTGGGC 1191601 >seq71 Length=2160155 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 412904 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 412963 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 412964 CCCCACGTTGGGC 412976 >seq117 Length=1847001 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 792696 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 792637 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 792636 CCCACGTTGGGC 792625 >seq99 Length=1790154 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 254910 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 254851 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 254850 CCCACGTTGGGC 254839 >seq98 Length=1825706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 74/89 (83%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 1356306 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 1356247 Query 142112 CCCCGCCAGAGACGCCAGGATGTGTGATG 142140 |||| |||||| ||||||||| || Sbjct 1356246 TCCCGGCAGAGA----TGGATGTGTGGTG 1356222 >seq351 Length=619597 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 199977 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 199919 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 199918 TCGAGTCCCGGCAGAGA 199902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027444556599185