Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq226 178 2e-39 seq68 147 4e-30 seq7633 143 5e-29 seq2815 114 2e-20 seq1233 114 2e-20 seq966 102 2e-16 seq558 91.5 3e-13 seq2653 84.2 4e-11 seq74 84.2 4e-11 >seq226 Length=808630 Score = 178 bits (196), Expect = 2e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || | || |||| |||| ||| || |||||||| || |||||||| Sbjct 361812 TTTTACTGCCCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTG 361753 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || ||||| || || | |||||||| | |||||| |||||||| || || || || ||| Sbjct 361752 TAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGG 361693 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || |||||||||||||| || ||||| |||||||| || |||||||| Sbjct 361692 TCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTG 361633 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| ||||||||| || || |||||||||||||| || |||||||| Sbjct 361632 GGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 361577 >seq68 Length=2311667 Score = 147 bits (162), Expect = 4e-30 Identities = 176/238 (74%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 68224 GATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGT 68283 ||| || || ||||| | || |||| |||| ||| || || || || || | ||||| Sbjct 1552604 GATCTTCATGCCCTCCTC--AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGT 1552547 Query 68284 TATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTT 68343 | || ||||| || |||| | |||||| | ||| || || || || || ||||| || | Sbjct 1552546 TGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCT 1552487 Query 68344 GGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTG 68403 |||| || || |||||||| || || || ||||| ||||| |||| ||| |||||||| Sbjct 1552486 GGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCAC 1552427 Query 68404 CTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 1552426 CGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 1552369 Score = 132 bits (146), Expect = 9e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || | || || || | |||||| || ||||| || |||| Sbjct 1552813 AGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGG 1552754 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 | |||||| | ||| || || || || || ||||| || ||||| || || |||||||| Sbjct 1552753 CTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCT 1552694 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||| |||| ||| ||||| || | || || |||| ||| Sbjct 1552693 TTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACCTCCACCGTG 1552634 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||| ||| Sbjct 1552633 ATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 >seq7633 Length=1847 Score = 143 bits (158), Expect = 5e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||| ||| || || || || || ||||||| || ||||| || |||| | | Sbjct 1769 CGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTA 1710 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | ||| ||||| || || || || || || ||||| || || |||||||| ||| Sbjct 1709 TCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 1650 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| || || || | ||| ||| |||| | | || || |||| |||||| Sbjct 1649 TCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATG 1590 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || || || ||||||||||| ||||| ||||||| Sbjct 1589 GTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq2815 Length=13304 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || ||| | || |||||||| |||||||| || || | Sbjct 3013 AGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGG 2954 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| | |||||| || || || || ||||| || || || |||||| Sbjct 2953 CCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCC 2894 Query 68364 TTGTCTTGAATCTTTGCCTTGAC 68386 ||||| || ||||| |||||||| Sbjct 2893 TTGTCCTGGATCTTGGCCTTGAC 2871 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || ||| | || |||||||| |||||||| || || | |||||||| Sbjct 326 ACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCA 267 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| | |||||| || || || || ||||| || || || ||||||||||| || Sbjct 266 AGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 207 Query 68373 ATCTTTGCCTTGAC 68386 ||||| |||||||| Sbjct 206 ATCTTGGCCTTGAC 193 >seq1233 Length=91233 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || || ||| | || |||||||| || ||||| || || | Sbjct 81235 AGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 81294 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| | |||||| || || || || ||||| || || ||||||||| Sbjct 81295 CCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 81354 Query 68364 TTGTCTTGAATCTTTGCCTTGAC 68386 ||||| || ||||| |||||||| Sbjct 81355 TTGTCCTGGATCTTGGCCTTGAC 81377 >seq966 Length=135400 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325 ||||| | || |||||||| || ||||| || || | |||||||| | |||||| | || Sbjct 102725 TGGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCTGG 102666 Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 |||| || || || || ||||| || | |||||||||||||| || ||||| ||||||| Sbjct 102665 CGAAGATCAGCCTCTGCTGGTCAGGAAGGATGCCTTCCTTGTCATGGATCTTGGCCTTGA 102606 Query 68386 C 68386 | Sbjct 102605 C 102605 >seq558 Length=349536 Score = 91.5 bits (100), Expect = 3e-13 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTC-GTCGG--CATTCATGACGCCCGCCTTCT 9951 ||||||||||||| | | || ||| || || || || |||||| ||| | ||| Sbjct 123146 AGAAGTCTGCGTCCAGTCTGAAGGTGTTATCTGTTGGTCCAGACATGACCCCCATCCTCT 123205 Query 9952 GGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCA 10011 |||||||| ||||| ||| |||||||||| ||| ||||| || || ||| ||||| Sbjct 123206 GGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCA 123265 Query 10012 TGAAGTCAAAGGGGTTCTC 10030 ||||||| ||||||||||| Sbjct 123266 TGAAGTCGAAGGGGTTCTC 123284 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 127148 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 127207 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 127208 TACTGGATGGGGAA 127221 >seq2653 Length=13515 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| ||| | ||||||||||| |||| ||| |||||||||| ||| ||||| Sbjct 12339 CATGACCCCCATCCTCTGGTACTCCCCGACCCTCTTCTCAAAGAAGTTGGTCTTTCCCTC 12280 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| ||||||||||||||||||||| || Sbjct 12279 CAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTGTC 12244 >seq74 Length=2059002 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||||||||| || |||||||| ||||||||||| | ||| || || Sbjct 1725006 CCTTCCTTGTCTTGAATTTTCGCCTTGACATTTTCGATGGTGTCACTGGGTTCAACCTCA 1724947 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| | || || || || |||||||| Sbjct 1724946 AGGGTGATGGTTTTCCCCGTTAATGTTTTCACAAAGATCTGCAT 1724903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921279268460200