Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq345 475 7e-129 seq38 113 9e-20 seq558 105 1e-17 seq33 105 1e-17 seq2653 100 5e-16 seq580 96.9 7e-15 seq114 89.7 1e-12 >seq345 Length=614307 Score = 475 bits (526), Expect = 7e-129 Identities = 1085/1609 (67%), Gaps = 74/1609 (5%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 ||||| |||| | |||| |||| | | ||| | ||||||||||| ||| | |||| Sbjct 404520 GAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCC---CTCTCC 404464 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | ||| |||||||| || || || | ||| Sbjct 404463 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGG 404404 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 404403 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 404344 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || ||||| |||| || |||||| ||||| |||||||||||| | ||| Sbjct 404343 GACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTC 404284 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | | || || || | |||||||| Sbjct 404283 TCCTTCAGCAGCTTCCAGTCCCACAGGTCAG-----TCGGCGTCTT----GTCCCACATG 404233 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || ||||||| | ||| |||||||||| ||| ||||| ||| |||||| || | Sbjct 404232 TCGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCC--CA 404175 Query 244367 CGCTGG--GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCA 244424 ||| || |||| ||||| | || || |||||||||||||||||||| || ||| Sbjct 404174 GTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCT 404115 Query 244425 TCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTG--AAGGGGATGCCCATCATCATGAAGA 244481 |||| | | || | |||| ||| | | |||||| | ||||| |||||| Sbjct 404114 GGATGTTGA-GCAGCTGAGCCT--CCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGG 404058 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 |||| || | ||||| || ||||| ||||| || ||||| || |||||||| | || Sbjct 404057 CGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGG 403998 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 | ||||| || ||||| ||||| || || | |||||| | ||| | |||| | Sbjct 403997 CCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTT 403938 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || ||||| | |||||| || || | | || |||| Sbjct 403937 TGGTC-ACAGATGCCAGTTTTTTAAAGTCATAA--GT-GCGCTCA--GGCG--------- 403893 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || || |||||| |||| | ||||| ||||| || |||||||| || | | || Sbjct 403892 -TGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTG 403834 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | || | ||| ||||| | ||| |||||||||||||||||||| | ||| || Sbjct 403833 GTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGG 403774 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||| ||||| ||||| | |||| | ||| |||||||| |||| Sbjct 403773 TTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGG 403714 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCT 244900 | | | || | || ||| || | | ||| || ||| | || | || || Sbjct 403713 GACTCTATGATGGCGTACCAAAGCTGCTGAGCTTTCACCACACGCTTCACCCTCCCTTCC 403654 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 |||||| |||||||| ||| ||||| |||||| |||||| || || || Sbjct 403653 TTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGA 403594 Query 244961 CACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 ||| || ||| ||||| ||| ||| || | | || || | || |||||| || Sbjct 403593 CACT-CGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAG 403535 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 |||||||||||| ||||| | ||| ||||| |||| |||||||| ||| ||||||||| Sbjct 403534 GTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTT 403475 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 |||| ||||||| | |||||||| ||||| | ||||| ||||||| ||| | |||| Sbjct 403474 CTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAA 403415 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGA 245195 ||| ||||| | |||||||| || || || | | | |||||| |||| | | Sbjct 403414 GGCCCCGGGTCTTTTGTTGCCACCTTGATCGA----CGTAGCGAGCGGTGTTGTTGTAAA 403359 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 | ||| | || || | ||||| |||| |||||||| || ||||||| || Sbjct 403358 CTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAG 403299 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 || |||| | ||||| | | ||| | || ||||| |||||| |||||||||| Sbjct 403298 TGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGC 403239 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 | ||| | |||||| ||||| || |||||||| |||||| ||||| |||| Sbjct 403238 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGC 403179 Query 245376 AGGAGGACAGCTGGGGC---TTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGG 245432 || ||||||||| ||| |||| | | | |||||| ||||| || |||||| | Sbjct 403178 AGCTGGACAGCTGCGGCCGATTGG---TTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAG 403122 Query 245433 TAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCG 245491 | || | | ||| || || | |||||||| || || ||||||| | ||| Sbjct 403121 TGAACCA-CTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCG 403063 Query 245492 TGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGG 245550 |||||| | | ||||||||| ||||||| ||||| ||| || ||| | Sbjct 403062 TGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCG-CTC---GGCCACCTTG-- 403009 Query 245551 TCCCTTG------AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 || ||| |||| ||||||||||| || |||||||| || ||| Sbjct 403008 -CCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAG 402961 >seq38 Length=2821725 Score = 113 bits (124), Expect = 9e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || ||||| | ||| ||||| |||||| || || |||||| Sbjct 1027534 ACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTCGTGTACGCCTCGATC 1027475 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| |||||| || || ||||| || | || |||||| Sbjct 1027474 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATCGGGGCCAACAGCAGG 1027415 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGCGGAG 244248 ||||||||||| |||||||| ||| ||| || Sbjct 1027414 CTGTTCCTCACACCGTGCCTGAGGACGCGCAG 1027383 Score = 104 bits (114), Expect = 4e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| ||||| ||| | |||||||||||||||| || || Sbjct 1026610 GTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGG 1026551 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| ||||||||||||||||||||||||| | ||| ||| || || ||| Sbjct 1026550 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTCTGTCTGC 1026491 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 | ||| || | || ||| || | | |||||| ||| Sbjct 1026490 GACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACC 1026452 >seq558 Length=349536 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || |||| || || | || || ||||| ||||||||||| || | |||||| Sbjct 123889 GGAGAGCGGGTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 123830 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||| | ||| || ||| | ||||||||| || |||||| ||||| || Sbjct 123829 TCCATCTTCTGGTTGAAGAAGCGAGGCCT-GATGCCCGGTCTGACCTTCAGCAACGAGCT 123771 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| ||||||| Sbjct 123770 CATCAGCAGAGACGAGG 123754 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 123279 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 123220 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 123219 GGTCGGGGAGTACCAG 123204 >seq33 Length=3077319 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | ||||| ||||||||||||||||| ||| |||| || Sbjct 3038969 GGGGAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTTTGCT 3039028 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| ||||| ||| ||| ||| || ||||| || || |||| ||| || ||||| Sbjct 3039029 GCCATCTATTGGCTAAAGAAGAGAGGCCTC-ATGCCTGGCCTGACCTACTCCAATGAACT 3039087 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||||| |||| Sbjct 3039088 GATCAGCAGGGATGAGG 3039104 >seq2653 Length=13515 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || | || || ||||| ||||||||||| || | |||||||||||||||| Sbjct 11493 TGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCCTCCATCTTCT 11552 Query 42766 GGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 || | ||| || ||| | ||||||||| || |||||| ||||| ||||||||||| Sbjct 11553 GGTTGAAGAAGCGAGGCCT-GATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGA 11611 Query 42825 GACGAGG 42831 ||||||| Sbjct 11612 GACGAGG 11618 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||||||| | ||||| | || ||||||||||||||||| |||||||||||| | Sbjct 11122 GAGGTGCAGGTCCCAGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATAGAGAACATC 11181 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 ||||||||| ||||| | ||| || |||| |||||| ||| ||| Sbjct 11182 CACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGAGCCC 11229 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||| | Sbjct 12249 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGAG 12308 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 12309 GGTCGGGGAGTACCAG 12324 >seq580 Length=310202 Score = 96.9 bits (106), Expect = 7e-15 Identities = 198/289 (69%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 242943 ATGAGGTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCA-- 243000 ||| | || || |||||| ||| ||| | || || ||||| || |||||||| | Sbjct 53543 ATGCGATTTCCAAACAGGAACACGCCGGTGGGGCAACTGATCGACGCGTACCTGAAAACT 53484 Query 243001 ACAAGAGCG-ATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 |||| ||| | ||| |||| |||| ||||| | || || || ||||| || |||||| Sbjct 53483 ACAACGGCGGAGCTGAACGACCACGCGGTACATTTGCTATTTTCCGCCAATCGTTGGGAA 53424 Query 243060 GCCGC--CTCCGACCTGAAGCGCAAGCTGATGAAGGGTACCACC---ATCGTGCTCGACC 243114 |||| ||| || ||||| || ||| || |||| ||| |||||| ||| Sbjct 53423 TCCGCGCCTCTGATGCGAAGC--AAACTGCAGAGCGGTATCACACTTATCGTG---GACA 53369 Query 243115 GCTACGCGTTCTCCGGCGTAGCCTTCACGGCGGCGAAGCCCGGGTTCGAGCTCGAGTGGT 243174 | |||||||||||||| || || ||||| || || ||||||||| | || |||| Sbjct 53368 GATACGCGTTCTCCGGAGTTGCTTTCACTAGAGCTAAACCCGGGTTCTCTGTGGACTGGT 53309 Query 243175 GTAAGCGAACCGACGTGGGTCTGCCCAAGCCCGACCTGGTGGTGTTCCT 243223 | | | | | ||| | || || || || || ||||| || || || || Sbjct 53308 GCATGAAACCTGACATTGGACTACCAAAACCGGACCTCGTTGTATTTCT 53260 >seq114 Length=1837260 Score = 89.7 bits (98), Expect = 1e-12 Identities = 181/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 242949 TTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGC 243008 || || ||||||| ||| ||| | || || ||||| || ||||||||| || | | Sbjct 618425 TTTCCAGACAGGAACACACCGGTGGGTCAACTGATCGACGCGTACCTGCAAAAGACAACG 618366 Query 243009 GATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAAGCCGCCTCC 243068 |||||| ||||| || ||||| | | || || ||||| || |||||| | || || Sbjct 618365 GATCTGAGCGATCGCGCTGTACATTTGTTATTTTCCGCCAATCGCTGGGAATCGGCGCCC 618306 Query 243069 GACCTGAAGCGCAAGCTGATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGTTCTCC 243128 | | |||| ||| || || ||||| |||| | || | ||||||||||| Sbjct 618305 CTAATACGGAGCAAACTGCAGAGCGGCACCACGCTCGTCGTGGATAGATACGCGTTCTCG 618246 Query 243129 GGCGTAGCCTTCACGGCGGCGAAGCCCGGGTTCGAGCTCGAGTGGTGTAAGCGAACCGAC 243188 ||||| || || || || || ||||||||| | | || ||||| | | | ||||| Sbjct 618245 GGCGTTGCTTTTACTAGCGCTAAACCCGGGTTCTCGATGGACTGGTGCATGAAACCCGAC 618186 Query 243189 GTGGGTCTGCCCAAGCCCGACCTGGTGGT 243217 || || | || || || || || || || Sbjct 618185 GTCGGGTTACCAAAACCAGATCTCGTTGT 618157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943987610711600