Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq101 98.7 9e-16 >seq101 Length=1578606 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 |||||||| ||||| ||||| || |||| ||||||||| |||| | ||| ||||||||| Sbjct 214064 TAGCTGGCGATGTTGAAAGGCACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGA 214123 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 ||||| ||||| |||||| || || || ||||| | ||| ||||| || || ||| Sbjct 214124 CAGGACAGCTCGCCGTCACAGACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCC 214183 Query 20396 AT 20397 || Sbjct 214184 AT 214185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441208471389400