Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq923 91.5 1e-13 seq689 86.0 5e-12 >seq923 Length=195030 Score = 91.5 bits (100), Expect = 1e-13 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||||||| Sbjct 47528 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACC 47587 Query 114392 AAAACTGATATATTGAGCCATTCG 114415 | ||||||| || ||||||||||| Sbjct 47588 ATAACTGATTTAATGAGCCATTCG 47611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 72/84 (86%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||||| | | |||| |||||||| Sbjct 47528 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACC 47587 Query 115589 AAAACTGATATATTGAGCCATTCG 115612 | ||||||| || ||||||||||| Sbjct 47588 ATAACTGATTTAATGAGCCATTCG 47611 >seq689 Length=283669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 115534 GTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCAAA 115591 |||||| |||||||||| |||| |||||||||||||| | | |||| ||||||||| | Sbjct 61643 GTATTGGCTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACCATA 61584 Query 115592 ACTGATATATTGAGCCATTCG 115612 |||||| || ||||||||||| Sbjct 61583 ACTGATTTAATGAGCCATTCG 61563 Score = 86.0 bits (94), Expect = 5e-12 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 114337 GTATTG-CTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACCAAA 114394 |||||| |||||||||| |||| |||||||||||||| | | |||| ||||||||| | Sbjct 61643 GTATTGGCTCTAGAATTGCCACAGTTATCCAAGTAACGGCGAGCGATCAAAGGAACCATA 61584 Query 114395 ACTGATATATTGAGCCATTCG 114415 |||||| || ||||||||||| Sbjct 61583 ACTGATTTAATGAGCCATTCG 61563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396918264487570