Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2653 91.5 2e-13 seq558 87.8 2e-12 >seq2653 Length=13515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || ||||||| Sbjct 11618 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 11559 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 |||||||||| || | || ||||| ||||||||||| ||||||||| ||||||| Sbjct 11558 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 11499 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 11498 CCACCAAACGCTC 11486 >seq558 Length=349536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||| ||| || ||||| || || ||||||| Sbjct 123754 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 123813 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 |||||||||| || | || ||||| ||||||||||| ||||||||| ||||||| Sbjct 123814 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 123873 Query 126186 C 126186 | Sbjct 123874 C 123874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597131197787800