Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq321 93.3 5e-14 seq1622 91.5 2e-13 seq597 89.7 6e-13 seq68 89.7 6e-13 seq1198 86.0 7e-12 seq6242 84.2 2e-11 seq16 82.4 8e-11 >seq321 Length=734258 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 56999 AAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| |||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 548882 AAAATTGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 548941 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 548942 CTYACCACTATACTAACGAGGA 548963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 548303 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 548362 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 548363 CTATACTAACGAGGA 548377 >seq1622 Length=59531 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 12997 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 12938 Query 57067 TACTACCGAGGA-TTGA 57082 ||||| |||||| |||| Sbjct 12937 TACTAACGAGGAGTTGA 12921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 13600 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13541 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 13540 TACTAACGAGGA 13529 >seq597 Length=260031 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100197 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100256 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 100257 TACTAACGAGGA 100268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 104538 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 104597 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 104598 TACTAACGAGGA 104609 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 149807 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 149748 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 149747 TACTAACGAGGA 149736 >seq68 Length=2311667 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||||| |||| |||| || ||||| | || ||||| || | | Sbjct 1552593 CCTCCTC--AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGAC 1552536 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || ||||| || || ||||| || ||||| || || |||| ||||||||| | || Sbjct 1552535 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552476 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || || ||| ||| || || | ||| | | ||||| | ||||| Sbjct 1552475 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACC 1552416 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || ||||||||||| || || || || ||||| |||||||| ||||| || || Sbjct 1552415 TCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTTTAC 1552363 >seq1198 Length=111961 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 60785 CTCCCCGTCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 60844 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 60845 TACTAACGAGGA 60856 >seq6242 Length=716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| |||||| ||||||||||| |||||| Sbjct 122 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACTATACTAACGAGGA 64 >seq16 Length=4474261 Score = 82.4 bits (90), Expect = 8e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATAC 57069 |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1523986 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATAC 1523937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543010555084400