Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq226 111 2e-19 seq68 100 3e-16 seq2815 91.5 1e-13 seq345 86.0 6e-12 seq1233 82.4 8e-11 >seq226 Length=808630 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 361773 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 361714 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| ||||| || ||||| || || || || || ||| Sbjct 361713 GCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 361654 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||||| || | || Sbjct 361653 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 361594 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || || ||||| ||||| || ||| Sbjct 361593 TTGACAAAAATCTGCATGTTTATA 361570 >seq68 Length=2311667 Score = 100 bits (110), Expect = 3e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || | |||||||| || | | ||| || ||||| ||||| ||||| Sbjct 1552565 GTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCA 1552506 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | ||||||||| ||||| || ||||||||||| || || || ||| Sbjct 1552505 GCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTC 1552446 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||||| ||||| || || || | |||||| || || | || Sbjct 1552445 ACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTC 1552386 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 1552385 TTCACAAAGATCTGCATGTT 1552366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 ||||| || | |||||||| || | | ||| || ||||| ||||| ||||| ||| Sbjct 1552789 GATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCA 1552730 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 |||| || | ||||||||| ||||| || ||||||||||| || || || ||| || Sbjct 1552729 AAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACG 1552670 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | ||||||||| ||||| || || || | |||||| || || | || || Sbjct 1552669 GTCTCTATGGTATCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTC 1552610 Query 64430 ACGAAAATTTGCAT 64443 || || || | ||| Sbjct 1552609 ACAAAGATCTTCAT 1552596 >seq2815 Length=13304 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || | || || ||||||||||| | | |||||| | ||| Sbjct 329 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 270 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||| ||| | || |||| ||||||||| ||||| |||||||| || || Sbjct 269 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 210 Query 64352 TGTATTTT 64359 || || || Sbjct 209 TGGATCTT 202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || | || || ||||||||||| | | |||||| | ||| Sbjct 3007 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 2948 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||| ||| | || |||| ||||||||| ||||| |||||||| || || Sbjct 2947 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 2888 Query 64352 TGTATTTT 64359 || || || Sbjct 2887 TGGATCTT 2880 >seq345 Length=614307 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||| |||||||| || | || || | || |||||| ||| | || | |||| Sbjct 403869 GATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCAC 403810 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || || ||||| ||||||||||| || | ||| || || ||||||| |||||| Sbjct 403809 AAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCT 403750 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCC 154736 |||||||| |||||||| || || || ||| Sbjct 403749 TTGTACAACATGTACGGCGTTCCGGTCTCC 403720 >seq1233 Length=91233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || | || || |||||||| || | | |||||| | ||| Sbjct 81241 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 81300 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||| ||| | || |||| ||||||||| ||||| || ||||| || || Sbjct 81301 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 81360 Query 64352 TGTATTTT 64359 || || || Sbjct 81361 TGGATCTT 81368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499458775995400