Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq345 212 6e-50 seq38 111 2e-19 >seq345 Length=614307 Score = 212 bits (234), Expect = 6e-50 Identities = 1022/1601 (64%), Gaps = 67/1601 (4%) Strand=Plus/Plus Query 93733 TTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACCG 93792 ||||| ||||||||| || || || || || || | |||| ||| ||||||| ||| Sbjct 402968 TTCAAGACTCTGGAGCGCTCCTATCTGCTGAAAATCAACGGCAAGGTGGCCGAGCGCCCG 403027 Query 93793 CACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTTG 93852 || || |||| ||| | || | | ||||| ||||| |||||| |||| | Sbjct 403028 CAGCACATGCTCATGAGGGTGTCTGTTGGGATCCACGGGACCGACAT--CGAA------G 403079 Query 93853 CGGGCTTTCAGAG--ACA---TGCGG---GACAAGAGGTATACCATGGCCACCCCGACCC 93904 ||| | | ||| ||| ||| | || ||| ||| || ||| | ||||| | Sbjct 403080 CGGCCATCGAGACGTACAATCTGCTGTCAGAGAAGTGGTTCACTCACGCCTCTCCGACTC 403139 Query 93905 TGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGG 93964 | |||||||| || ||| ||| ||| |||| || ||| || | | | || | Sbjct 403140 TCTTCAACGCAGGAACCAATCGGCCGCAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAG 403199 Query 93965 CCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACG 94024 |||| |||| || || | ||||| ||| ||| | || || ||| || || | | Sbjct 403200 ACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAGTCTG 403259 Query 94025 CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTA 94084 | || || || || | ||| | | | | ||| || ||||||| ||||| Sbjct 403260 CCGGAGGCATTGGCGTAGCGGTCAGCTGCATCAGATCCACTGGGAGCTACATCGCCGGTA 403319 Query 94085 CCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCT 94144 |||| || | ||||||||| || || || ||||| | || | ||||||| | || |||| Sbjct 403320 CCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACACCGCTCGCT 403379 Query 94145 ACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGC 94204 |||| || || ||||| | || || | ||||| | || | ||||| |||| Sbjct 403380 ACGTCGATCAAGGTGGCAACAAAAGACCCGGGGCCTTCGCCATGTACTTGGAGCCTTGGC 403439 Query 94205 ACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGG 94264 | |||||| | ||| | || ||| |||||| ||||| || | |||| | Sbjct 403440 ATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAGGAGCAGAGAG 403499 Query 94265 CCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAA 94324 |||||||||| ||||| || || ||| | || ||||| || ||||| || || |||| | Sbjct 403500 CCAGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGAGAGCA 403559 Query 94325 ACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTG-TGGA 94383 || | |||| ||| | |||||||| || ||||| || || ||||| || ||| Sbjct 403560 ACCAGGACTGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCT---CGACGAGTGCTGGG 403616 Query 94384 TCGCG--TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTA 94441 | | ||||| | |||| || ||||| | | || | || | | || Sbjct 403617 GGGAGGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGGGAGGGTGAAGCGTGTGG 403676 Query 94442 TGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCT 94501 || | ||| | |||| ||| | ||| | || ||| |||||| || ||||| | Sbjct 403677 TGAAAGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGACCGGAACGCCGT 403736 Query 94502 ACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCA 94561 |||| |||| ||| ||| | |||| ||| |||||||||| | || || |||| Sbjct 403737 ACATGTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCA 403796 Query 94562 AGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGT 94621 || || || ||||||| ||| | || || || || | |||||| | || || | Sbjct 403797 AGTGCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACGAGGTGGCAGTTT 403856 Query 94622 GTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG-TCTACTGCT 94680 | || |||| |||||| || || || | || || | |||| || || || Sbjct 403857 GCAATCTGGCATCCATC--GCTCTCAACAT--GTACGTCACGCCTGAGCGCACTTATGAC 403912 Query 94681 TCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTCTTGAACCTGAACAG 94739 | | ||| | | | ||||| | ||| ||| ||| ||| |||||| Sbjct 403913 TTTAAAAAACTG--GCATC-TGTGACC-------AAAGTGATAGTCAAAAACTTGAACAA 403962 Query 94740 GGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCG 94799 | | || || | |||| |||||| ||||| ||||| |||| || ||| || | Sbjct 403963 GATCATTGAAATCAACTACTACCCGGTCCCCGAGGCCGAGATGTCCAACAAACGCCACAG 404022 Query 94800 GCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTA 94859 ||| ||||| ||||| ||||||||||| || ||||| | | |||||||| |||| Sbjct 404023 GCCGATCGGAATCGGAGTCCAGGGTTTAGCAGACGCCTTCATCTTGATGCGTTACCCCTT 404082 Query 94860 CG--ACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGG 94917 | | || | | | | || | | || | | || || || | ||| || |||| Sbjct 404083 TGAAAGTCCGGAGGCTCAGCTG--CTCAACATCCAGATGTTTGAGACCATCTACTACGCC 404140 Query 94918 GCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGC------GGGCCAC-ACGAATC 94970 || || | | ||| | || || ||| |||| ||||| | |||| | Sbjct 404141 GCTCTGGA-------GGCCAGCT-GCGAGCTCG--CGGCCAAACTGGGCCCCTACGAGAC 404190 Query 94971 GTTCCGCGGATCGCCCTTGGAACA-GGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 || | || |||||| | | || |||||| | |||| |||| | |||| || || Sbjct 404191 GTACGAAGGCTCGCCCGT-CAGCAGGGGCATCCTGCAGTACGACATGTGGGACAAGACGC 404249 Query 95030 CCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACACGGTGTGA 95086 | | | |||| |||| ||||||| || | | | || | ||| ||||| |||| Sbjct 404250 CGACTGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGA--TCGCCAAGCACGGCGTGA 404306 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 |||| ||||| |||| || ||||||||||| ||||| || |||||||| ||||||| Sbjct 404307 GAAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACA 404366 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 ||||||| |||| | | |||| |||| | |||| | | |||| ||| |||| || | Sbjct 404367 ACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGT 404426 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 ||| || ||||| || || || ||||||||| ||| ||||| || Sbjct 404427 TCCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGGGGGCTGTGGAACGAGG 404486 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 || | |||||| | ||| | | |||||||||| | ||| Sbjct 404487 AGATGAAGAACAAGCTGATCGCCAACAACGGCTCCATTCAG 404527 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/237 (68%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 93330 TGTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGA 93389 |||||||||||| || ||||| | | | | || |||||| | || ||| ||||||| Sbjct 402562 TGTCATGTTCGATAAAATCACCTCTCGTATCCAGAAGCTTTGCTATGGCCTGAACTCTGA 402621 Query 93390 CTTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCAC 93449 || ||||| || | || ||||||||| |||| || || | ||| ||| ||||| Sbjct 402622 GTTTGTGGACCCGGCTCAGATCACCATGAAGGTGATCCAAGGTCTGTATAGCGGCGTCAC 402681 Query 93450 AACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCC 93509 || || |||||||| || || || |||| | |||| ||| || || ||||| Sbjct 402682 CACCGTGGAGCTCGACACGCTAGCAGCTGAGATTGCTGCCACGCTGACGACCAAACACCC 402741 Query 93510 GGACTACTCCATTTTGGCTGCTCGAAT--CTGCCTGAGCAACCTCTATAAAGAAACC 93564 ||||| |||| | ||||| | || ||| || | ||||| | ||||| ||| Sbjct 402742 CGACTATGCCATCCTCGCTGCGAGGATCGCTGTCTCA--AACCTGCACAAAGAGACC 402796 >seq38 Length=2821725 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||||| ||| ||||| ||||||| |||||||||||||||||||| |||||| Sbjct 1027398 CACGGTGTGAGGAACAGCCTGCTGTTGGCCCCGATGCCCACGGCCTCCACGGCTCAGATC 1027457 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||||| |||| | | ||| |||| | |||| | |||||||| Sbjct 1027458 CTGGGCAACAACGAGTCGATCGAGGCGTACACGAGCAACATCTACACTCGCAGGGTGCTC 1027517 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || |||| |||| Sbjct 1027518 TCAGGAGAGTTCCAGGTCA 1027536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494539008368600