Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 9e-15 seq20 93.3 3e-14 seq715 89.7 4e-13 >seq40 Length=2865257 Score = 95.1 bits (104), Expect = 9e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 108447 ACAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC 108506 ||||||| |||| |||||| | || ||||||||||||||||| ||||| || || Sbjct 371484 ACAGAACGACATCTTCGAGTGGGCTCGAGACCACAGGGTTCACCACAAATACTCGGAGAC 371543 Query 108507 GACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCAT 108566 | ||||| || ||||||||| | | ||||||| ||| | ||| | || ||||| | Sbjct 371544 GGACGCCGATCCTCACAACGCCCGCCGCGGGTTCTTCTTCGCCCACATCGGCTGGCTGCT 371603 Query 108567 GATGACCAAGGACCCCGACGTGATC 108591 | || |||| |||||||||| ||| Sbjct 371604 GGTGCGCAAGCACCCCGACGTCATC 371628 >seq20 Length=3646065 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 118188 CCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTGTGATGTATC 118247 ||||| |||||| ||| ||||||||||| |||| ||||| |||| |||| || ||| Sbjct 2280880 CCGGCTCTTCCTGACTCCTGATAATAACCCTCCATAGATTTAGGCAGACTGGCGTGGATC 2280821 Query 118248 ACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGTCGAACATATCAC 118306 || | |||||||| || || || || ||||| ||||| ||||| || | ||| ||||| Sbjct 2280820 ACGTAGCGCACGTCAGGCTTGTCAATACCCATGCCGAAGGCTATAGTGGCACAGATCAC 2280762 >seq715 Length=171852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 67897 AGTACCCGAGATAGGAGACAAGTTCTGTTCGGGAATGGCTCAGAAAGGCACGTGCGGGAT 67956 ||| || || || || |||||||| ||||| |||||||| ||||||||||| || || || Sbjct 108134 AGTGCCGGAAATCGGCGACAAGTTTTGTTCCGGAATGGCCCAGAAAGGCACATGTGGCAT 108193 Query 67957 GATGTTGAATCAGGAAGACATGCCGTTTA-CTTCTTCGGGTATGACACCCGATCTCATCA 68015 || | |||||||| |||||||| | | | | |||||||| || ||| | |||| Sbjct 108194 AATTTACCCCCAGGAAGATATGCCGTTCAGCGACAGC-GGTATGACTCCGGATATAATCA 108252 Query 68016 TCAACCCGCACTGTCTCCCCAGCCGCATGACGATCAATCAGCTCAT 68061 |||| || ||||| | || | |||||||| || || |||| Sbjct 108253 TCAATCCAAACTGTATTCCTTCTAGAATGACGATTAACCAAATCAT 108298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381634214684040