Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq345 242 4e-59 seq7633 98.7 1e-15 seq226 95.1 1e-14 seq68 86.0 6e-12 >seq345 Length=614307 Score = 242 bits (268), Expect = 4e-59 Identities = 908/1408 (64%), Gaps = 52/1408 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 404394 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 404335 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| ||||| || || || | || ||||||| || | ||||||| | Sbjct 404334 GGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 404275 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| | | ||| ||| || ||||||||||||||| | | || Sbjct 404274 AGCTTCCAGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCCC 404215 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGG--GCCAGTTCGC 153312 | ||| |||| ||| | |||| |||| ||| | |||| || || |||| Sbjct 404214 CTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCC--CAGTTTGGCCGCGAGCTCGC 404157 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| || ||| | ||||| ||||| || || || | ||||| | || | Sbjct 404156 AGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCA--GCTG 404099 Query 153373 CTTCTTCG--CTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGAT 153430 || || || || | || |||| || | |||||||| || | |||||||| Sbjct 404098 AGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGAC 404039 Query 153431 ACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGT 153489 |||| ||||| || | || | |||| | |||| |||| | || |||| Sbjct 404038 TCCGATTCCGATCGGCCTGTGGCGTTTGTTGGA-CATCTCGGCCTCGGGGACCGGGTAGT 403980 Query 153490 GATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTT 153549 ||| || || || ||||| | ||| || | |||||| || | | |||| Sbjct 403979 AGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTT 403920 Query 153550 TCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCC 153608 | | || ||||| || || | |||| ||| | || | || || || ||| Sbjct 403919 TTTTAAAGTCATAAGTGCGCTC----AGGCGTGACGTACATGTTGAGAGCGATGGATGCC 403864 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTG 153668 ||||| || || ||| ||| |||||| | |||| | ||||| ||| | ||| | |||| Sbjct 403863 AGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTG 403804 Query 153669 CTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAG 153728 ||||| || ||| ||||| ||| ||||| ||||| || | ||||||||||||||| | Sbjct 403803 CTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTAC 403744 Query 153729 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCC 153785 | ||||||||| |||||||| || | || | ||| ||| | || | | Sbjct 403743 AACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAA---AGCTGC 403687 Query 153786 TGCGCTCGCACC---CGCTGCCGATAGCGGCCC-TCGCTCTCGTATCGCTCGTACAGTCG 153841 || ||| |||| |||| | | | ||| || |||||||| |||||| Sbjct 403686 TGAGCTTTCACCACACGCTTC----ACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTT 403631 Query 153842 CTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGA 153901 ||||||||| || || |||| ||| |||| || ||||||| | ||||||||||| || Sbjct 403630 CTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGA 403571 Query 153902 CCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACAT 153961 ||| | || | | || || ||||||||| || || | ||| || || || | Sbjct 403570 CCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAA 403511 Query 153962 GAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTA 154019 ||||| | || | ||| |||||| ||| |||| ||||| | || | | | Sbjct 403510 AAGGTCTCTGGCTCTCTGC--TCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCA 403453 Query 154020 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCG 154076 | | ||| ||||| || || | ||| | ||| | ||| || | | || || Sbjct 403452 AACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCA 403393 Query 154077 CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTT 154136 || |||||||||| ||| | | |||||| | || | || |||||| |||| ||| | Sbjct 403392 CCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTG 403333 Query 154137 GCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA--- 154193 | | | |||||||| ||| | ||| || | | | ||||||| | | Sbjct 403332 GAGTTCCCGTTGGTACCGGCGATGTAGCTCCC-----AGTGGATCTGATGCAGCTGACCG 403278 Query 154194 --ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGA 154251 ||||||||||| ||| | |||| || ||| ||||| | ||| || ||||| Sbjct 403277 CTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGA 403218 Query 154252 TGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCG---GAA 154308 |||| |||||||| ||||| | | |||||||||| || ||| |||| || Sbjct 403217 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGAT 403158 Query 154309 TGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCA 154368 || ||||| || ||||| || ||| ||||| || ||| || | || || Sbjct 403157 TG---GTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCA 403101 Query 154369 TGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCA 154428 |||||| |||||||| ||||||| || ||||| || || | | || | || Sbjct 403100 GATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCA 403041 Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||||||||||||||| || ||||| || Sbjct 403040 TGAGCATGTGCTGCGGGCGCTCGGCCAC 403013 >seq7633 Length=1847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| | |||||||| || | || | | |||| ||||| || |||| ||||||| Sbjct 1782 GCCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGA 1723 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || ||||| || | | | || || | ||| ||||| ||||| Sbjct 1722 CAGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 1663 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| || | || | ||| | ||| || | | |||| | ||||| Sbjct 1662 GATGCCTTCTTTGTC-CTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCA 1604 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA 138613 |||| | ||| | || |||||||| || || || || || ||||||| Sbjct 1603 CCTCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq226 Length=808630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || || || || || || |||| Sbjct 361770 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 361711 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 361710 AAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACA 361651 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||||||||| | || | || || ||||| || || || Sbjct 361650 TTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 361591 Query 138601 ACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 361590 ACAAAAATCTGCATG 361576 >seq68 Length=2311667 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 138396 CAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACG 138455 || ||||| || | || | | |||| ||||| | |||||||||||| || || || Sbjct 1552587 CAGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCG 1552528 Query 138456 CGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC 138515 || || || ||||| || | | | || || | ||| ||||| ||||| || ||||| Sbjct 1552527 GCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTC 1552468 Query 138516 TTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCG 138574 ||| || || | || | || | || || | |||||| ||||||||| |||| Sbjct 1552467 TTTTTC-CTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCG 1552409 Query 138575 TCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | | || |||||||| || || || ||||| ||||||||| Sbjct 1552408 TGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATG 1552368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496077635305200