Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq345 141 9e-29 seq226 114 1e-20 seq38 93.3 4e-14 >seq345 Length=614307 Score = 141 bits (156), Expect = 9e-29 Identities = 999/1558 (64%), Gaps = 81/1558 (5%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||| ||||| |||| ||| || | | Sbjct 404460 AGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTG 404401 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| ||| ||||| ||||||||||| || || ||||| || || | Sbjct 404400 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 404341 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTTTTC 146222 || || ||||| ||||| ||||| ||||||||||||||| ||| | ||||| || Sbjct 404340 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTG-CTTGGCGATCTTCTC 404282 Query 146223 ---CCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT---AGTTGTC 146276 | | || || ||| | ||||| | || || || | |||| | |||| Sbjct 404281 CTTCAGCAGCTT---CCAGTCCCACA---GGTCAGTCGG---CGTCTTGTCCCACATGTC 404231 Query 146277 GTAATGCATAGTGCCGCGGAACAGGGGGCTATTC-TCGTACGATTCATAAGGACCGTCGA 146335 ||| |||| |||| | | | |||| | | ||||||| || || || | | | Sbjct 404230 GTACTGCAGGATGCCCCTGCTGA-CGGGCGAGCCTTCGTACGTCTCGTAGGG---GCCCA 404175 Query 146336 TCTTGGCC---AGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCA 146392 |||||| || |||||||| || |||||||| | |||| |||||||| ||| Sbjct 404174 GTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCT 404115 Query 146393 TGTAGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGC 146450 | ||||| || ||| |||||| || || ||||| || || | | | ||||| Sbjct 404114 GGATGTTGA-GCAGCTGAGCCTCCGGACTTTCAAAGGGG-TAACGCATCAAGATGAAGGC 404057 Query 146451 GTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGC 146510 ||| || | |||||| | |||| || | || | ||| ||||| || | || Sbjct 404056 GTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGC 403997 Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 | | || |||| |||| | || ||||||||||| | || || | | ||| Sbjct 403996 CTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTT 403937 Query 146571 CGTCAAACGAT-TCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGT 146629 |||| | ||| ||| | ||||| | | | | | || ||||| || ||| Sbjct 403936 GGTCACA-GATGCCAGTTTTTTAAAGTCATAAG--TGCGCTCAGGCG-TGACGTACATGT 403881 Query 146630 TGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAA 146689 ||| ||||| || |||| || || || || |||||| | | || | ||| | Sbjct 403880 TGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGA 403821 Query 146690 TCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGT 146749 ||| | ||| | |||||||||||||||| |||||| ||| | ||||| || | ||| Sbjct 403820 CCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGT 403761 Query 146750 TGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGA 146809 |||| | ||| ||||| | ||||||||| ||||| || | || ||| | |||| Sbjct 403760 TGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATG- 403702 Query 146810 ATCTAAACAAATCT-CTG-GCCTTTACTTGTC-TTTCGTACAGTTTATT-CTTTTCGTAT 146865 | | |||| || ||| || || || | ||| || | || ||| |||||| Sbjct 403701 -GCGTACCAAAGCTGCTGAGCTTTCACCACACGCTTC--ACCCTCCCTTCCTTCTCGTAT 403645 Query 146866 TTCTCGTACAATATTTCAAA--ACTAGAACC-GTACTCGTCGAGGAGGCCGGGATACTTT 146922 | ||||| | ||||| || || | ||||||| ||| || ||| ||| Sbjct 403644 GTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---GAGCCCCGGACACTCG 403588 Query 146923 TTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGA 146982 |||||||| | ||| ||||| || | || || ||| || | ||| |||| ||||| Sbjct 403587 TTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGG 403528 Query 146983 ATCCAAAGGCCCAGCATCAAGTCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTC- 147040 ||||| ||| | | | ||| | || || || ||||| ||| |||| | || Sbjct 403527 ATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGC-TCCTCCTTGCCAGTGTT-CTTCT 403470 Query 147041 TCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGC 147100 ||| | |||| || | | || |||||||||||||| ||| ||||| || | Sbjct 403469 TCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCC 403410 Query 147101 C---TTTTCGCTTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACA 147157 | | || || || || |||||||||| ||| | |||| ||| | |||| | || Sbjct 403409 CGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCA 403350 Query 147158 TGGACACGAGGCCGCCGGATTT---TGTGGT---GCCGTTGTA---TTGAGCG---CTGA 147205 ||| || || ||| ||| || |||| | || |||| || | |||| Sbjct 403349 TGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGA 403290 Query 147206 CGC-TTTGCACGCTCAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTG 147263 || || |||| | || | |||||| |||| || ||||| | ||| ||| | Sbjct 403289 TGCAGCTGACCGCT-ACGCCAATGCCTCCG-GCAGACTTGGAAATGAGGGCGCACTGCTT 403232 Query 147264 CAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACA 147323 || ||| | ||||||||| ||||||||||| || || ||| ||| ||| || | Sbjct 403231 CAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGA 403172 Query 147324 CATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAAC--GTG 147381 || || || ||| || || || || || || || |||||| |||||| | Sbjct 403171 CAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTT 403112 Query 147382 CCCAGACTCATCA-ATTGATACGTTTCAATGG-CGCTCATAACGTCATCGCCGTGAATGG 147439 | | || || || |||| ||||| || |||| |||| | ||| ||||| || Sbjct 403111 CTCTGA--CAGCAGATTG-TACGTCTCGATGGCCGCT-TCGATGTCGGTCCCGTGGATCC 403056 Query 147440 CCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTA 147499 | | | || | ||||||||||||||| || || || || | | | | |||| ||| | Sbjct 403055 CAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCA 402996 Query 147500 ATAGATATCCATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGT 147556 ||||| | | | |||||| ||||| || ||| | |||||| | | || |||| Sbjct 402995 GCAGATA-GGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGT 402939 >seq226 Length=808630 Score = 114 bits (126), Expect = 1e-20 Identities = 167/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 |||||| ||||| | | |||| |||| || | || ||||| || || || ||||| Sbjct 361809 TACTGC-CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTA 361751 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 ||| || ||||| ||| || ||||| || || ||| |||||| | |||||| || Sbjct 361750 GTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTC 361691 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 ||||| ||||| ||||||||| ||| || ||||| | ||| | |||||| | Sbjct 361690 AGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGG 361631 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| || || | ||| | || ||||| || || || || ||||||||||||||| Sbjct 361630 CTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 361576 >seq38 Length=2821725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| ||||||||| | |||||| |||||| |||| ||||| Sbjct 1026607 TACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTG 1026548 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||| || ||| ||||| Sbjct 1026547 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTC 1026498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475323765108400