Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq345 185 8e-42 seq38 87.8 2e-12 >seq345 Length=614307 Score = 185 bits (204), Expect = 8e-42 Identities = 900/1417 (64%), Gaps = 46/1417 (3%) Strand=Plus/Plus Query 122886 AAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGC 122945 |||||| | | ||||| ||||| || || || ||||||||| | || || | || Sbjct 402998 AAAATCAACGGCAAGGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCTGTTGGG 403057 Query 122946 GTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTT 123005 | ||||| |||||||||| || | ||| || ||| || || |||| | || | Sbjct 403058 ATCCACGGGACCGACATCGAAGCGGCCATCGAGACGTACAATCTGCTGTCAGAGAAGTGG 403117 Query 123006 TTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCG 123065 ||||| ||||| ||| ||| | ||| ||| || || || ||| ||| |||| Sbjct 403118 TTCACTCACGCCTCTCCGACTCTCTTCAACGCAGGAACCAATCGGCCGCAGCTGTCCAGC 403177 Query 123066 TGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT 123125 || || |||||| || || || ||||||||| || ||||| || || || | Sbjct 403178 TGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAG 403237 Query 123126 TGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCA-CGACGTAAGAGG 123184 ||||| | |||||||| | || ||| ||||| ||||| | || || | | | ||| Sbjct 403238 TGCGCCCTCATTTCCAAGTCTGCCGGAGGCATTGGCGT-AGCGGTCAGCTGCATCAGATC 403296 Query 123185 CCGCGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCG 123244 | || ||| |||| | ||| |||| | | || |||||| | |||||||| | Sbjct 403297 CACTGGGAGCTACATCGCCGGTACCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAG 403356 Query 123245 AGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA------GGCGC 123298 ||||||||| ||| ||| || ||||||| || || ||||| |||| || || Sbjct 403357 AGTTTACAACAACACCGCTCGCTACGTCGATCAAGGTGGCAA---CAAAAGACCCGGGGC 403413 Query 123299 GATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACG 123358 | || || || | || || ||||| |||| |||| || || || | | || Sbjct 403414 CTTCGCCATGTACTTGGAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAA 403473 Query 123359 CAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGA 123418 |||| || ||| || ||| |||| | || | || || || | ||| | ||||| Sbjct 403474 GAACACTGGCAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATCCCCGA 403533 Query 123419 TTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG 123478 |||| ||| || || | | || | ||||| || ||||||||| | ||| Sbjct 403534 CCTGTTCATGAAGCGAGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAACGAGTG 403593 Query 123479 TCCCGG-CTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC 123537 ||| || || || ||| | || | ||||||| || ||||| | ||||||| Sbjct 403594 TCCGGGGCTCGA-CGAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTACACTACATACGAGA 403652 Query 123538 GCGAAGGCAAACAGGTTA---GTCAGGTTCCGGCACGTGA--TTTGTTCAAATTTATTAT 123592 ||||| | ||| | || ||| || | | |||| | | || || Sbjct 403653 AGGAAGGGAG---GGTGAAGCGTGTGGTGAAAGCTCAGCAGCTTTGGT--ACGCCATCAT 403707 Query 123593 CGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAA 123652 || | || || |||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 403708 AGAGTCCCAGACGGAGACCGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAGGAA 403767 Query 123653 AACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGA 123712 | ||| ||| || |||| || || || || || || | ||| | || | | || Sbjct 403768 GAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGTGGA 403827 Query 123713 ATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTG 123772 ||||| | ||||| | ||||| || || ||| |||| || || | || | Sbjct 403828 ATACACCAGCGCCGACGAGGTGGCAGTTTGCAATCTGGCATCCATCGCTCTCAACATGTA 403887 Query 123773 CGTCGAAAACG-------GCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTG 123825 |||| ||| || ||| | | || ||| || | | || ||| Sbjct 403888 CGTC----ACGCCTGAGCGCACTTATGACTTTAAAAAACTGGCATCTGTGACCAAAGTGA 403943 Query 123826 TAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTT 123885 |||| || || |||||||| || || || | || | || || | || || Sbjct 403944 TAGTCAAAAACTTGAACAAGATCATTGAAATCAACTACTACCCGGTCCCCGAGGCCGAGA 404003 Query 123886 TGTCTAATTTGAAAC---ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGT 123942 |||| || |||| |||| ||| ||||| | || | || || || || ||||| | Sbjct 404004 TGTCCAAC---AAACGCCACAGGCCGATCGGAATCGGAGTCCAGGGTTTAGCAGACGCCT 404060 Query 123943 TTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAG 124002 | | || |||| || | ||||| || || || |||| || | || || Sbjct 404061 TCATCTTGATGCGTTACCCCTTTGAAAGTCCGGAGGCTCAGCTGCTCAACATCCAGATGT 404120 Query 124003 CCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCG 124062 || || || || |||| |||| ||||||| |||||||| || ||| | | ||| Sbjct 404121 TTGAGACCATCTACTACGCCGCTCTGGAGGCCAGCTGCGAGCTCGCGGCCAAACTGGGCC 404180 Query 124063 CGTACGAAAGTTACGCGGGCA-GCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121 | ||||| | |||| ||| ||||| | ||| | || || ||||||||||||||||| Sbjct 404181 CCTACGAGACGTACGAAGGCTCGCCCGTC-AGCAGGGGCATCCTGCAGTACGACATGTGG 404239 Query 124122 AATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGC 124179 | || ||||| | |||||||||||| | | || | | | |||| | || Sbjct 404240 GACAAGACGCCGACTGACCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAGC 404297 Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239 |||| || | ||| ||| || ||||| ||||| ||||| |||| || || || Sbjct 404298 ACGGCGTGAGAAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGATCC 404357 Query 124240 TAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAA 124276 | || |||||||| ||| ||||| ||| ||| | ||| Sbjct 404358 TGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAA 404394 >seq38 Length=2821725 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||| |||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 1026498 GAAACYGGGACGCCTTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAA 1026557 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 ||| |||| || || |||| || || || ||| | || || | || |||| Sbjct 1026558 AACCTGGGCACCATCAAATCCAGCAACCTGTGCACGGAGATCGTAGAGTACA 1026609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451834913558600