Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq42 156 6e-33 seq414 123 4e-23 seq37 91.5 2e-13 >seq42 Length=2906915 Score = 156 bits (172), Expect = 6e-33 Identities = 200/276 (72%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 8900 CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCT 8959 |||||||| ||| || | ||| ||| | || ||||| || |||||||| || || Sbjct 2307206 CCCTTCACGTTGTTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCC 2307265 Query 8960 ACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 ||| || |||||||||||||| ||||||||| |||||||||||||| ||| ||| Sbjct 2307266 ACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTCCCCAGC 2307325 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 || || || | ||| || |||||||||| ||| | || |||| ||||||||||| | Sbjct 2307326 AGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTCTCCCCGAAGATGGCGTTG 2307385 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || || || || || || | | ||| | |||||| || || || || |||||||| || Sbjct 2307386 GGCCGGGGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACGGCGTCCACGTCGCCGTAC 2307445 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | | |||| | ||||| || || ||||| ||| Sbjct 2307446 ATCTCCTCCAGCAACGCAGCCATTTCTTTCTCCCCT 2307481 Score = 102 bits (112), Expect = 1e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| || || |||||||||| ||| || ||||| ||| Sbjct 2308367 TCGGGCATCAGCGGGTGCCAGTGGTACAGCGTGTTGAACTCGGACGCGATGCGGTTTTGG 2308426 Query 9613 TACTGAAAGGCGGTACC-GAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 ||||| ||| || | | ||| || | ||| |||||||| | |||| |||||||||||| Sbjct 2308427 TACTGGAAG-CGCTGGCTGAAGAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTGGTACCC 2308485 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || ||||| || || | ||| | ||| || ||||| || || Sbjct 2308486 ACTCAGGTGCTGCACGTAATCCTCGATCACAATCTTGATGGTCTCACC 2308533 >seq414 Length=443506 Score = 123 bits (136), Expect = 4e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| |||||||| || || ||||| |||||||||||||| ||||||||| | ||| Sbjct 420146 GTTTTGACGATGTCGAAGCCCGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGG 420087 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| ||| || ||||||| ||| || ||||| |||| ||| | ||| Sbjct 420086 GAGTTGATGGGGTTGCCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATG 420027 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || || |||||| | ||| || | |||| ||| | ||| | || Sbjct 420026 CTCTCACCAAAAATAAAGTTGGGACGGGTTTTCTCCAGCATGAGGCCGGGGTAAAACTCC 419967 Query 9119 ACAGCCTCGACGTCGCCATAGAGGGCTTCCA 9149 | ||| |||| ||| || ||||| | |||| Sbjct 419966 AGAGCGTCGATGTCTCCGTAGAGTTCCTCCA 419936 >seq37 Length=2935640 Score = 91.5 bits (100), Expect = 2e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || |||||||| || || || | || || ||||||||||| |||||||| | || || Sbjct 1375166 TTTACGATGTCGAAGCCAACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAA 1375107 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 |||||| |||| ||||||| || || | ||||| || || |||| || | ||||| Sbjct 1375106 CAGATGGGGTTCCCCATGAGACCCTTGAGAGAAAAGGGGGCGCCCATTTCCACCATGCTT 1375047 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || | ||| || |||||| ||| || | | || || | || | ||| | Sbjct 1375046 TCTCCAAATACGGCGCCCTGACGCGTTTTCTCCAGCAGTAATCCGGGATAAAATTCAAGC 1374987 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 | |||| ||| || || || |||| | | |||||||||| ||| || ||| Sbjct 1374986 GTGTCGATGTCACCGTACAGCTCTTCGAGTGTGCTGGCTATCTCCTCATCATCTGCAA 1374929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723458547019000