Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq345 224 2e-53 seq38 109 9e-19 >seq345 Length=614307 Score = 224 bits (248), Expect = 2e-53 Identities = 606/915 (66%), Gaps = 24/915 (3%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 ||||||| ||| ||||||||||| | |||||| | |||| || ||||||||| | Sbjct 403827 TCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTC 403768 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | ||| || | ||| ||||||| |||| ||||| ||||| ||||| |||| || Sbjct 403767 TTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCT 403708 Query 205004 AGAATGTGGGTCCACAATTCGCGAGC---CTCCACTTGCTTCACGTACATCCCTTGAGAC 205060 | ||| | ||| | | |||| | |||| ||||||| | |||||| | Sbjct 403707 ATGATGGCGTACCAAAGCTGCTGAGCTTTCACCACACGCTTCAC---CCTCCCTTCCTTC 403651 Query 205061 TCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGA 205117 |||||| | ||||||||| | |||| || || | || |||| ||||| ||| Sbjct 403650 TCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTC---GAGCCCCGGA 403594 Query 205118 CATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 || | |||||||||||||||||||| ||| | | | ||| | || ||| |||||| Sbjct 403593 CACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGG 403534 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 ||| |||||||||| | || || || || | ||| || | || | ||| |||| Sbjct 403533 TCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTC 403474 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 || |||| || || ||| | | | ||| ||||| ||||| || ||| ||| | Sbjct 403473 TTCTTCAGCTCTAG-GAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAA 403415 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 || || || || ||||| ||||| || || || ||||| | |||| |||||| Sbjct 403414 GGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCT 403355 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGC 205416 |||||| || ||||| ||||||| | ||||||| || | | |||| ||| ||| Sbjct 403354 CAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATG---TAGCTCCCAGT 403298 Query 205417 CCTCACGTTGGAGATGGCCG---CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCA 205473 | || || || ||| ||||||| || || | | |||||| || ||||||| Sbjct 403297 GGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCA 403238 Query 205474 CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCA 205533 || | ||| ||| |||||||||| ||||| ||||| || | | || |||| Sbjct 403237 CTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCA 403178 Query 205534 CGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGA 205592 | ||||| ||| | ||||| || |||| |||||| || || |||||| ||| Sbjct 403177 GCTGGACAGCTGCGGCCGA-TTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGA 403119 Query 205593 AGCGCTTCTCGCTCAAACACCTGTAGGTCTCCA-GCACGCTCTCCAGATCGAAGCCGTGA 205651 | | |||||| || |||| ||||| | | |||| || | ||| ||||| Sbjct 403118 ACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCT-TCGATGTCGGTCCCGTGG 403060 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACC 205711 || || | | | |||||||| | ||| || || | ||| |||| | |||| | Sbjct 403059 ATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATT 403000 Query 205712 TTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGGTGTAGTCCCTA 205771 || |||||||||| | ||| || || || | || |||||| ||| | | || || Sbjct 402999 TTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTG 402940 Query 205772 GAATAGTCGATGGCG 205786 ||| ||||||| Sbjct 402939 TCATAAATGATGGCG 402925 Score = 174 bits (192), Expect = 2e-38 Identities = 350/514 (68%), Gaps = 9/514 (2%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | |||||||||| ||| ||||| | || || ||||||| ||||| ||| Sbjct 404528 CCTGAATGGAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCC 404469 Query 204159 ACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCC 204218 | |||| || | ||| || ||||||| |||||| || |||||||| || |||| Sbjct 404468 TCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCC 404409 Query 204219 CTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAG 204278 |||||| | | |||| ||||| | | |||| | |||||||||||| | ||||| | Sbjct 404408 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 404349 Query 204279 CGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGA 204338 ||||| ||||||||||| || ||||| |||||| ||| | ||| |||| || || Sbjct 404348 CGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGA 404289 Query 204339 CCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGA 204398 | | |||||| ||||||| || || | || || | ||||||||||| Sbjct 404288 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGT 404229 Query 204399 ACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTT 204458 |||| | |||||| ||||| || ||| | ||||||| || || | | || Sbjct 404228 ACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGG--GCCCAGTTT 404171 Query 204459 --CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAAC 204516 | || |||| ||| ||| ||| ||| ||||| ||||||||||| ||||| | Sbjct 404170 GGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGAT 404111 Query 204517 GTTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCC 204574 ||| | | ||| ||||||| | ||||| | || || || | || |||| Sbjct 404110 GTTGAGCAGCTG--AGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCT 404053 Query 204575 GCCAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 || || ||||| ||||||||||| | ||| |||| Sbjct 404052 GCTAAACCCTGGACTCCGATTCCGATCGGCCTGT 404019 >seq38 Length=2821725 Score = 109 bits (120), Expect = 9e-19 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| ||||||| ||||| ||||| |||||||| Sbjct 1028325 CTTCCAGCCGTAGAAGTGCATGCTGCTGAGTTTGCCGTAATTGGGCTCGGCGATGTGAAT 1028266 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||||||||||| ||||||||| ||||||| |||||||| ||||| || | | || Sbjct 1028265 RTTCAGAGACTGGCTCTGGTCGATG-TAGGCGCCACGATCTGCTGCCATCTTCAGGACGG 1028207 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||| || || |||||||| || || Sbjct 1028206 TTTTCTGAGAGATTTCCCACACGGTTTT 1028179 Score = 100 bits (110), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| ||| || ||||| || ||||||| || ||| | | |||| | ||| | | |||| Sbjct 1027536 TGACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTCGTGTACGCCTCGA 1027477 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 || |||||||||||| | |||||||| ||| |||||||||||| || |||| |||| Sbjct 1027476 TCGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATCGGGGCCAACAGCA 1027417 Query 204312 GGGAGTTGCGCACACCGT 204329 || ||| | |||||||| Sbjct 1027416 GGCTGTTCCTCACACCGT 1027399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794859153779600