Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq226 154 3e-32 seq68 132 1e-25 seq7633 122 2e-22 seq18886 95.1 3e-14 >seq226 Length=808630 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| |||||||| |||| ||||||||| | || || | ||||| Sbjct 361789 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 361730 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||||||||| || | ||||||||| ||| || ||||| || Sbjct 361729 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 361670 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || ||| | |||||| | | || || |||| ||||| || Sbjct 361669 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 361610 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || |||||||| || Sbjct 361609 CTTGCCAGTGAGGGTCTTGACAAAAATCTG 361580 >seq68 Length=2311667 Score = 132 bits (146), Expect = 1e-25 Identities = 169/232 (73%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || || ||||| | || ||||||||| | || |||| | ||| Sbjct 1552581 CAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATC 1552522 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || || || || | ||||||||| ||| || |||||| || Sbjct 1552521 TTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTC 1552462 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||||| || | |||||| || || |||| |||||| || Sbjct 1552461 CTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGT 1552402 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTTACTTTAC 199648 |||||| ||||| || |||||||| || || ||| || ||||| || || Sbjct 1552401 CTTACCAGTGAGGGTCTTCACAAAGATCTG---CATGTTTACCTTATTTAAC 1552353 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || | || ||||| | || ||||||||| | || |||| | ||| Sbjct 1552808 CAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATC 1552749 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || || || || | ||||||||| ||| || |||||| || Sbjct 1552748 TTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTC 1552689 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||||| || | ||| || || || |||| |||||| || Sbjct 1552688 CTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACCTCCACCGTGATGGT 1552629 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||||| ||||| || |||||||| || Sbjct 1552628 CTTACCAGTGAGGGTCTTCACAAAGAT 1552602 >seq7633 Length=1847 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| |||||||| || || ||||| |||| || |||||| | || |||| | ||| Sbjct 1767 CAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTATC 1708 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || || || || | ||||||||| ||| || |||||| || Sbjct 1707 TTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 1648 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||| | || | | |||| | || || |||| |||||| || Sbjct 1647 CTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATGGT 1588 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| || ||||| || || || Sbjct 1587 CTTACCAGTGAGGGTCTTCACGAAGATCTG 1558 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| |||||||| || || ||||| |||| ||||||||| | || |||| | ||| Sbjct 1539 CAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGACAGGGTCCGGCTATC 1480 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || || || || | ||||||||| ||| || |||||| || Sbjct 1479 TTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 1420 Query 199537 CTGAATCTT 199545 ||| ||||| Sbjct 1419 CTGGATCTT 1411 >seq18886 Length=299 Score = 95.1 bits (104), Expect = 3e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||| |||| |||| |||| |||| | || || | ||||| Sbjct 229 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGCAGTCGGACAGGGTGCGGCCATC 170 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||| |||||||| ||||||||||| || | ||||||||| ||| || |||||| Sbjct 169 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGATTGATGCCTTCT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178471699570595