Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq226 136 4e-27 seq68 105 8e-18 seq1233 91.5 2e-13 seq1430 89.7 6e-13 seq244 87.8 2e-12 seq504 82.4 9e-11 >seq226 Length=808630 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||| ||||| || | || |||||| ||||| ||||||||||| Sbjct 361803 CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 361744 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||||||||| |||| | ||||||||| | || Sbjct 361743 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 361684 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| | | | ||||| || | ||||| Sbjct 361683 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 361624 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||| ||||| || || || || ||||| || ||||| || Sbjct 361623 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 >seq68 Length=2311667 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| ||||| |||| || ||||| | ||| ||||||||||| Sbjct 1552593 CCTCCTC--AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGAC 1552536 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || || || ||||| ||||| || || |||| | ||||||||| | || Sbjct 1552535 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552476 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | ||| | | ||||| | ||||| Sbjct 1552475 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACC 1552416 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||||||||||||| || || || || || || |||||||| ||||| || Sbjct 1552415 TCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||||| |||| | ||||| | ||| |||||||||| Sbjct 1552824 TGCCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGG 1552765 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || || || ||||| ||||| || || |||| | ||||||||| | | Sbjct 1552764 ACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAG 1552705 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || || ||| |||||| ||| | ||| | | || || | |||| Sbjct 1552704 GGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCA 1552645 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||||||||||||| || || || || || || |||||||| | ||| Sbjct 1552644 CCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 >seq1233 Length=91233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| | || | ||||| ||||| || | || | |||| ||||| |||||||||| Sbjct 81224 TGCCAACCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGG 81283 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||| |||||| |||| | ||||||||| | | Sbjct 81284 ACAGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAG 81343 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || ||||||||| |||||| ||||| Sbjct 81344 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 81376 >seq1430 Length=76859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 113/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||||| || || || | |||| ||||| |||||||||| Sbjct 25232 TGCCACCCCTCAGACGCAGGACCAGGTGAAAGGTTGACACCTTCTGGATGTTGTAGTCGG 25291 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC-GGCC 46483 | || ||||| | || || |||||||||| |||||| |||| | ||||||||| || | Sbjct 25292 ACAGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAC 25351 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | || || ||| || || ||| ||| || Sbjct 25352 GGGATGCCTTCATTGCCCTGGAGCTTGGTCTAGA 25385 >seq244 Length=814671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||||| || | ||| | |||| ||||| ||||||||| Sbjct 499814 TGCCACCCCT-AGACGCAGGACCAGGTGAAGGGTAGACACCTTCTGGATGGTGTAGTCGG 499756 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||||| ||| |||| | ||||||||| | | Sbjct 499755 ACAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGTGAAGATCAGCCTCTGCTGGTCAGGAG 499696 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | || ||||| |||| |||||| Sbjct 499695 GGATGC-CTCCTCGTCCTGGATCTT 499672 >seq504 Length=373429 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||| ||||| || || || | ||| ||||| |||||||||| Sbjct 37570 TGCCACCCCTCAGACGCAGGACCAGGTGAAAGGTTGACACCTGCTGGATGTTGTAGTCGG 37629 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC-GGCC 46483 | ||||| | || || ||||||||| |||||| |||| | ||||||||| || | Sbjct 37630 --ACGGTGCGGCCATCTTCAAGCTGCTTGTTGGCGAAGATCATCCTCTGCTGGTCAGGAC 37687 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | || || |||||| |||||| |||||| Sbjct 37688 GGGAGGCCTTCATTGTCCTGGATCTTGGTCTTGA 37721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565027954678200