Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq226 134 1e-26 seq7633 131 2e-25 seq2653 123 2e-23 seq558 114 1e-20 seq68 113 5e-20 seq33 96.9 3e-15 seq2815 84.2 2e-11 >seq226 Length=808630 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || ||| ||||| || || || || || ||||| ||||| ||||||||| | || || || Sbjct 361570 TATAAACATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA 361629 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | ||| |||| | | ||| | || | || |||| ||||| || || || || | Sbjct 361630 GCCCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCC 361689 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||| |||| || | ||| ||||| |||||||| || | |||||||| ||| Sbjct 361690 TGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGA 361749 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| ||||| | || || || |||| |||||| |||| || || Sbjct 361750 CTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGG 361803 >seq7633 Length=1847 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || ||||| || || ||||| || || |||||||| | || || ||| || | Sbjct 1556 TGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATG 1615 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 ||| | | | || | |||| || |||| |||||||| || || || | ||||| | Sbjct 1616 ACAACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1675 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 || |||| |||| || || ||||||||||| || || ||||| ||||||| ||| Sbjct 1676 AGAGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACA 1735 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||||| | || || || |||| ||||||||||| |||||| Sbjct 1736 TCCAGAAGGAATCAACCCTCCACCTGGTCCTGCGTTTGAGGGGCGGC 1782 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38322 AAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCG 38381 |||| || |||| |||||||| || || || | ||||| ||| |||| |||| || Sbjct 1405 AAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTGCT 1464 Query 38382 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACG 38441 || ||||||||||| || || ||||| |||||||||||||| |||||| | || Sbjct 1465 GGGAAACAGCTGGAAGATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAACC 1524 Query 38442 CTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || |||| ||||||||||| || ||| Sbjct 1525 CTCCACCTGGTCCTGCGTTTGAGGGGTGGC 1554 >seq2653 Length=13515 Score = 123 bits (136), Expect = 2e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 11034 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 10975 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | || |||| | |||||||| || ||||||||||||||||||| Sbjct 10974 AAGTAGCGCTCTTCATCCTTCAGGGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 10915 Query 133399 T 133399 | Sbjct 10914 T 10914 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| || || | Sbjct 11618 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 11559 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || |||| |||||| || || ||||||| ||||| || || ||||| | Sbjct 11558 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 11499 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 11498 CCACCAAACGCTCTCC 11483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||||||| || || | ||||| || ||||| | |||||| |||||||| || Sbjct 11217 GTAGGTGTCGATCAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCTATGGCGATCTGG 11160 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| |||||||| || |||| ||||||||| ||| Sbjct 11159 AAGCCGTAGAAACACCTGGCCTCTGGGACCTGCACCTCCTGAGAGAAACGCTCCACC 11103 >seq558 Length=349536 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || || |||||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 126950 ACCAGGTTCTCATTGACGATACCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 127009 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | |||||| | || |||| | |||||||| || ||||||||||||||||||| Sbjct 127010 AAGTAGCGCTCTTCTTCCTTCAGGGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 127069 Query 133399 T 133399 | Sbjct 127070 T 127070 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| ||||||||||| |||| |||||||| ||||| || || | Sbjct 123754 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 123813 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | ||| || |||| |||||| || || ||||||| ||||| || || ||||| | Sbjct 123814 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 123873 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 123874 CCACCACCCGCTCTCC 123889 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/117 (78%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 |||||||||||| || || | ||||| || ||||| | ||||||||||||||| || Sbjct 126764 GTAGGTGTCGATCAGCAGGCTG--TACATCTCAGAGTGGATGTTCTCCATGGCGATCTGG 126821 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 |||||||| || |||| ||||| |||||| ||||| || | ||| ||||| ||| Sbjct 126822 AAGCCGTAGAAACACCTGGCCTCAGTCACCTGGACTTCCTGTGTGAAGCGCTCCACC 126878 >seq68 Length=2311667 Score = 113 bits (124), Expect = 5e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| || || |||||||| || || || ||| Sbjct 1552365 AAACATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCA 1552424 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | || | || | || |||| || ||||| || || || | || Sbjct 1552425 CGGTGACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGA 1552484 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | || |||| || |||||||||||||| || || ||||| |||||| Sbjct 1552485 CCAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTA 1552544 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||||| | |||||| | || ||||| |||| |||||| |||| Sbjct 1552545 CAACATCGATAAGGAATCAACCCTGCACCTGGTCCTGCGTCTGAG 1552589 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||| | || || || || || ||||| || || |||||||| || || || ||| | Sbjct 1552596 ATGAAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552655 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | || | || | || |||| || ||||| || || || | ||||| Sbjct 1552656 GATACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552715 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || |||| || |||||||||||||| || || ||||| |||||||||| Sbjct 1552716 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552775 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| | |||||| | | ||||| |||| |||||| ||||||| ||| Sbjct 1552776 ATCGATAAGGAATCACCCCTGCACCTGGTCCTGCGTCTGAGAGGTGGC 1552823 >seq33 Length=3077319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||| || ||||| ||| | | |||| ||| ||||||||||| | || | Sbjct 3039104 CCTCATCCCTGCTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCT 3039045 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | |||||| | ||||| || || ||| || ||||||| |||||| ||||| || |||| Sbjct 3039044 TTAGCCAATAGATGGCAGCAAAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAAAG 3038985 Query 133037 CCACCAGGCGCTCGCC 133052 |||| || ||||| || Sbjct 3038984 CCACAAGTCGCTCCCC 3038969 >seq2815 Length=13304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || ||||| || | ||||| ||| |||| || | ||| |||| Sbjct 2880 AAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCGCCAGCAAG 2939 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | |||||||| ||| ||||||||||| |||| | || || || Sbjct 2940 CAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAACCCTTCAC 2999 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| |||||| |||| || ||| Sbjct 3000 CTGGTCCTGCGTCTGAGGGGTGGC 3023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499986579414400