Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4 154 6e-32 seq53 96.9 1e-14 >seq4 Length=9009805 Score = 154 bits (170), Expect = 6e-32 Identities = 462/701 (66%), Gaps = 17/701 (2%) Strand=Plus/Minus Query 450912 TAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAA 450971 |||| ||||| |||||||| || ||||||| || ||||| ||||||| ||| | |||| Sbjct 6749612 TAGCCATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACGGAA 6749553 Query 450972 ATGTAGAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGT--- 451027 | || ||||| || || || || ||||| | || || | ||||| || | || || Sbjct 6749552 AGGTGGAAATCATCGCCAACGATCAAGGCAACAGGA-CGACTCC--CA--GCTACGTCGC 6749498 Query 451028 -TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATG 451085 || || || ||||||| || | || | ||||| || | | | | | | || Sbjct 6749497 CTTCACAGACACAGAAAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCCCTGAACC- 6749439 Query 451086 CCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTG 451145 || |||||| | | |||||| ||||| | ||||| | | || |||||| | | Sbjct 6749438 CCGCCAACACAATCTTTGATGCCAAACGGCTCATTGGGAGAAAGTTTGATGACCCTGTGG 6749379 Query 451146 TACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATA 451205 | || || | |||| ||| ||| | ||||| | | | || || ||||| | Sbjct 6749378 TCCAGTCTGATATAAAACTCTGGCCTTTCAAGGTAGTCAGTGACAATGGGAAGCCTAAAG 6749319 Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 ||| ||| | |||||||| ||||| || | ||||| |||||| || ||||| || ||| Sbjct 6749318 TTCGGGTAGAATATAAAGGGGAAACAAAGGAYTTTTG-TCCTGAGGAGATTTCTTCAATG 6749260 Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | |||||||| ||| | || || | | | || || | ||||| Sbjct 6749259 GTTTTGGTTAAAATGAGAGAGATTGCTGAGGCGTTTCTGGGACAGAAGGTGTCAAATGCA 6749200 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||| || || ||||||||||| || |||| ||||||| || |||||||| ||| Sbjct 6749199 GTCATTACAGTGCCAGCTTATTTCAACGACTCACAGAGGCAAGCCACCAAAGATGCTGGA 6749140 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 || |||| | || ||||| | || || || ||||| |||||||| || | || Sbjct 6749139 GTRATCTCTGGACTGAACGTTCTGAGGATCATCAACGAACCCACAGCAGCAGCCATYGCT 6749080 Query 451445 TATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGT 451504 || || || ||| || | ||| || ||| || | | | |||||| | || Sbjct 6749079 TACGGCCT-GGATAA--AGGGAAAAGAGGAGAGCGCAACGTGCTCATCTTTGATCTCGGC 6749023 Query 451505 GGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCA 451564 ||||| || |||| || | || | ||||| |||| |||||||||| || || Sbjct 6749022 GGAGGCACCTTTGATGTGTCMATCCTGACCATTGAGAATGGCATATTTGAAGTGAAAGCC 6748963 Query 451565 ACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||| || || || || || || || || |||| || Sbjct 6748962 ACATCTGGGGACACACACCTTGGTGGGGAGGACTTTGACAA 6748922 >seq53 Length=2629213 Score = 96.9 bits (106), Expect = 1e-14 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 ||||||| || || ||||| ||||| |||||||| | || || ||||| || ||||||| Sbjct 110219 ATGCAGTTATAACAGTTCCTGCTTACTTCAATGACTCCCAGCGCCAAGCCACCAAAGATG 110278 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 | ||| || ||||| | ||||| || || || ||||||||||| ||||| ||||| Sbjct 110279 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCCGCTGC 110336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974964425726780