Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4 300 1e-75 seq53 107 1e-17 seq1597 100 2e-15 seq92 93.3 3e-13 >seq4 Length=9009805 Score = 300 bits (332), Expect = 1e-75 Identities = 968/1481 (65%), Gaps = 34/1481 (2%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | |||||| |||||||| |||||||| | ||||| || || || || Sbjct 6748147 TTTGTCCACGGCCGACACATTTAGAATACCGTTGGCATCAATGTCAAAGGTTACCTCGAT 6748206 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 ||| || || ||||| |||| |||||||| ||| | | ||| | || || ||| Sbjct 6748207 TTGTGGCACACCTCTAGGAGCTGGTGGGATACCTGTGAGCTCAAACCTCCCAAGCAGATT 6748266 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 517427 || ||||| || | || |||||| ||| | | || || |||| || | | || | Sbjct 6748267 GTTGTCTTTGGTCATAGCTCTTTCACCTTCGTACACCTGWATCAGTA-CTCCTGGCTGGT 6748325 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 517486 |||| || || || | || | |||| | | | | ||| ||||| ||||| | | Sbjct 6748326 TATCAGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGAGGGGATTGTGGTGTTCCGTTTG 6748384 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 |||| | ||||||| |||||||| ||||| | ||| | ||| || || | ||||| Sbjct 6748385 ATAAGAGGCGTCATAACTCCACCTGCGGTTTCGATACCTAAAGAGAGGGGCGCCACATCC 6748444 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606 | || | | || || | || || ||| | || | || ||||| || || | Sbjct 6748445 AGCAGCAGCAAATCCTGGACGTTCTCYGAAGTGTCGCCCATGAGGATAGCAGCCTGGACC 6748504 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 ||||||||||| || || ||||||||||| || | ||| || |||| ||||||||| Sbjct 6748505 GCAGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTTTTGTTCAGTTCTTTACCATTA 6748564 Query 517667 AAAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATA 517724 || || | || |||| | | ||| | || || || | | || || ||||| | | Sbjct 6748565 AAGAAGTCCTGTAAGA-GYT-TCTGGATTTTGGGTATTCTTGTGGAACCACCAACCAGGA 6748622 Query 517725 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 517784 |||||||||| | || || |||||||| || | ||| | | || ||||| || | Sbjct 6748623 CAATTTCATGGATCTTAGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGCT 6748682 Query 517785 CAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 517844 | || |||| || | || | || || || || || || || || || Sbjct 6748683 CCAGTGTTCCTCTGAAGAGATCYGWGTTGAGCTCCTCAAAACGGGCCCTTGT--GATCGA 6748740 Query 517845 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 | || || || || || || |||| ||| || | ||||| ||| ||||| || Sbjct 6748741 GGTGTAGAAGTCGATACCCTCAAACAGAGAGTCGATCTCAATGTTAGCCTGAGTGCTGGA 6748800 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 517962 || | | | || || |||||| ||||||| || || | | ||| || | | Sbjct 6748801 GGACAAGGTCCTCTTTGCCTTTTCACAGGCTGTCCGCAGCCTCCTYACTGCTCTT--TTA 6748858 Query 517963 TTGATTCAAATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 || | | || | |||| | | ||||| || || || |||||| | | || | Sbjct 6748859 TTCTGTGAGATGTCTTTTCTGTGYTTTCTTTTAAACTCCTCAACAAAGTGATTGACCATT 6748918 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| || || || || | | || | || || || ||| | |||| || Sbjct 6748919 CGGTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCCCCAGATGTGGCTTTCACTTCAAAT 6748978 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||| |||| | || | | |||||| ||| || || || | |||||| || Sbjct 6748979 ATGCCATTCTCAATGGTCAGGATKGACACATCAAAGGTGCCTCCGCCGAGATCAAAGATG 6749038 Query 518141 AGTACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 || || || ||| |||| || |||||| || || || || | || || || Sbjct 6749039 AGCACGTTGCGCTCTCC-TCTT--TTCCCTTTATCCAGGCCGTAAGCRATGGCTGCTGCT 6749095 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || ||||| || || || |||| ||| || || |||| || ||| |||||||| ||| Sbjct 6749096 GTGGGTTCGTTGATGATCCTCAGAACGTTCAGTCCAGAGATYACTCCAGCATCTTTGGTG 6749155 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTC 518316 ||||| || ||||| ||||| ||||| || || || ||||| || |||| | || ||| Sbjct 6749156 GCTTGCCTCTGTGAGTCGTTGAAATAAGCTGGCACTGTAATGACTGCATTTGACACCTTC 6749215 Query 518317 TTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | | ||| || ||| | || | | | |||||||| |||| |||||| ||||| Sbjct 6749216 TGTCCCAG---AAACGCCTCAGCAATCTCTCTCATTTTAACCAAAACCATTGAAGAAATC 6749272 Query 518375 TGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---A 518431 | || || || | | ||| | ||| || |||| ||| || | || || | Sbjct 6749273 TCCTCAGGACAAAARTCCTTTGTTTCCCCTTTATATTCTACCCGAACTTTAGGCTTCCCA 6749332 Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCA 518491 || || | | || ||| ||| |||||| ||| ||||| || || || ||||| Sbjct 6749333 TTGTCAC--TGACTACCTTGAAA-GGCCAGAGTTTTATATCAGACTGGACCACAGGGTCA 6749389 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 | ||| | ||| ||||| | ||||| |||||||| || || |||| || || | ||| Sbjct 6749390 TCAAACTTTCTCCCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGCGGGGTTCAGGGCA 6749449 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 |||| | ||||| ||||||||||| || |||||| ||||| || | || || Sbjct 6749450 ACTTGGTTCTTGGCAGCATCTCCAATGAGCCTTTCTGTGTCTGTGAAGGCGACGTAGCTG 6749509 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 ||||| || | || |||||||| || || || ||||| || || || | || | ||| Sbjct 6749510 GGAGTCGTCCTGTTGCCTTGATCGTTGGCGATGATTTCCACCTTTCCGTGCTGGAAAACA 6749569 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || |||||| | || || || | |||||||||||| || Sbjct 6749570 CCAACACAAGAGTAGGTGGTGCCCAGATCAATACCAATGGC 6749610 Score = 147 bits (162), Expect = 2e-29 Identities = 347/516 (67%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | |||||| |||||||| |||||||| | ||||| || || || || Sbjct 6753700 TTTGTCCACGGCCGACACATTTAGAATACCGTTGGCATCAATGTCAAAGGTTACCTCGAT 6753759 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 ||| || || ||||| |||| |||||||| ||| | | ||| | || || ||| Sbjct 6753760 TTGTGGCACACCTCTAGGAGCTGGTGGGATACCTGTGAGCTCAAACCTCCCAAGCAGATT 6753819 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 517427 || ||||| || | || |||||| ||| | | || || |||| || | | || | Sbjct 6753820 GTTGTCTTTGGTCATAGCTCTTTCACCTTCGTACACCTGAATCAGTA-CTCCTGGCTGGT 6753878 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 517486 |||| || || || | || | |||| | | | | ||| ||||| ||||| | | Sbjct 6753879 TATCAGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGAGGGGATTGTGGTGTTCCGTTTG 6753937 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 |||| | ||||||| |||||||| ||||| | ||| | ||| || || | ||||| Sbjct 6753938 ATAAGAGGCGTCATAACTCCACCTGCGGTTTCGATACCTAAAGAGAGGGGTGCCACATCC 6753997 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606 | || | | || || | || || ||| | || | || ||||| || || | Sbjct 6753998 AGCAGCAGCAAATCCTGGACGTTCTCCGAAGTGTCGCCCATGAGGATAGCAGCCTGGACC 6754057 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 ||||||||||| || || ||||||||||| || | ||| || |||| ||||||||| Sbjct 6754058 GCAGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTTTTGTTCAGTTCTTTACCATTA 6754117 Query 517667 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || || | || |||| || | | || || || | | || || ||||| | || Sbjct 6754118 AAGAAGTCCTGTAAGAGCTTCT-GGATTTTGGGTATTCTTGTGGAACCACCAACCAGGAC 6754176 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 ||||||||| | || || |||||||| || | ||| Sbjct 6754177 AATTTCATGGATCTTAGACTTATCCAGCTTGGCATC 6754212 >seq53 Length=2629213 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || || || |||| ||||| || || ||||||||||| || | || ||| Sbjct 110360 TTTTTGTCCAGGCCGTAAGCAATGGCAGCGGCTGTGGGTTCATTAATGATACGCAGCACA 110301 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||| ||| |||| |||||||| |||||||| | || || || || || || Sbjct 110300 TTGAGACCAGAGATTGTTCCAGCATCTTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAA 110241 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| || ||||| |||| Sbjct 110240 GCAGGAACTGTTATAACTGCAT 110219 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| || |||||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 111534 CACATTGAGGATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACGCCTCT 111475 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 |||||||||| || || || | |||| | ||||| | ||||| || ||||| | Sbjct 111474 GGGAGCAGGTGGAATACCGGTCAGTTCAAATTTCCCCAGGATGTTATTGTCCTTAGTCAT 111415 Query 517384 TTTTCGTTCACCCTC 517398 || |||||| || Sbjct 111414 GGCTCTTTCACCTTC 111400 >seq1597 Length=45667 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||||||||||||||||||| || |||| | |||||| ||||||| Sbjct 39594 CCGTAGGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGGAGAACATTGAGACCAGAG 39535 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||| |||||||| ||||| || | || || ||||| || || ||||| || || Sbjct 39534 ATGGTTCCAGCATCTTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCAGGTACTGTG 39475 Query 518297 ATAACGGC 518304 || || || Sbjct 39474 ATTACAGC 39467 Score = 86.0 bits (94), Expect = 5e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| || ||||| || || || ||| | |||| ||||||||||||||| || || Sbjct 39093 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGATTTTTGGCTGCATCTCCGATGAGCC 39034 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| ||||| |||| || || || || || | || || || ||||| |||| Sbjct 39033 TCTCTGAATCTGTGAATGCCACRTAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAA 38974 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | |||||||| || || | || | || || ||||| | | || || |||| ||| | Sbjct 38973 TGATTTCAACCTTTCCGTGCTGGAACACTCCAACACAGGAATAGGTGGTCCCTAGATCGA 38914 Query 518703 TACCAA 518708 | |||| Sbjct 38913 TTCCAA 38908 >seq92 Length=1742495 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||| || || || || || | || |||| Sbjct 390732 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCAGTGGGCTCGTTGATGATACGCAGAACA 390673 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| |||| | || |||||||| || || || | || || || || || || Sbjct 390672 TTAAGGCCAGAAATTGTCCCGGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 390613 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 || |||||||| | || || | ||||| Sbjct 390612 GCGGGAACAGTCACCACAGCGTTTGTTAC 390584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779344370188210