Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 340 2e-88 seq92 178 2e-39 seq1597 89.7 7e-13 seq53 82.4 1e-10 >seq4 Length=9009805 Score = 340 bits (376), Expect = 2e-88 Identities = 1032/1593 (65%), Gaps = 22/1593 (1%) Strand=Plus/Plus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| || || || |||| ||||| || || ||||| |||||||| || || || ||||| Sbjct 6748033 CTTGTCGTCCTCTGCTTTGTACTTGTCTGCGTCTTGCACCATCTTCTCGATCTCGTCTTT 6748092 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 | | ||||| || || || || || || || | ||| || | | || || Sbjct 6748093 GCTGAGGCGGCCCTTGTCGTTGGTGATTGTGATTTTGTTTATTTTGCCAGTGCTTTTGTC 6748152 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 | || ||||| | |||||| || ||||||| || || |||| | |||||||| Sbjct 6748153 CACGGCCGACACATTTAGAATACCGTTGGCATCAATGTCAAAGGTTACCTCGATTTGTGG 6748212 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| || || || | ||| ||||| || | ||||| | ||||| | | |||| || Sbjct 6748213 CACACCTCTAGGAGCTGGTGGGATACCTGTGAGCTCAAACCTCCCAAGCAGATTGTTGTC 6748272 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | ||||||||| || || | || || | || || ||||| Sbjct 6748273 TTTGGTCATAGCTCTTTCACCTTCGTACACCTGWATCAGTACTCCTGGCTGGTTATCAGA 6748332 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 ||| |||||||| || | ||| || || || || || || | |||| || Sbjct 6748333 GTACGTGGAGAAGATCTGAGTCTGCTTCGAGGGGATTGTGGTGTTCCGTTTGATAAGAGG 6748392 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||||| ||||| ||||||| || | ||| || || | ||| |||| || | Sbjct 6748393 CGTCATAACTCCACCTGCGGTTTCGATACCTAAAGAGAGGGGCGCCACATCCAGCAGCAG 6748452 Query 6985 CAGGTCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || || || || |||| | || ||| | | ||| || || ||||||| Sbjct 6748453 CAAATCCTGGAC------GTTCTCYGAAGTGTCGCCCATGAGGATAGCAGCCTGGACCGC 6748506 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || || || || || || ||||| ||||| || |||| |||||||||||||| ||||| Sbjct 6748507 AGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTTTTGTTCAGTTCTTTACCATTAAA 6748566 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 | ||| ||| | | || ||||| || |||| ||| || ||||| |||| || || Sbjct 6748567 GAAGTCCTGTAAGAGYTTCTGGATTTTGGGTATTCTTGTGGAACCACCAACCAGGACAAT 6748626 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 ||||| | || || ||||| | ||| | ||| | || | || || || || |||| Sbjct 6748627 TTCATGGATCTTAGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGCTCCAG 6748686 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | | ||| | || || ||||||||||| || | || || || || || Sbjct 6748687 TGTTCCTCTGAAGAGATCYGWGTTGAGCTCCTCAAAACGGGCCCTTGTGATCGAGGTGTA 6748746 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || || | | || || || |||||| | | || | | || || || Sbjct 6748747 GAAGTCGATACCCTCAAACAGAGAGTCGATCTCAATGTTAGCCTGAGTGCTGGAGGACAA 6748806 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || | |||||| ||||| || || || | | | | || | || || Sbjct 6748807 GGTCCTCTTTGCCTTTTCACAGGCTGTCCGCAGCCTCCTYACTGCTCTTTTATTCTGTGA 6748866 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || ||||| | || || | ||||||||| ||| ||||| | | || || Sbjct 6748867 GATGTCTTTTCTGTGYTTTCTTTTAAACTCCTCAACAAAGTGATTGACCATTCGGTTGTC 6748926 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||| | |||||| ||||| | || ||||| |||||||| || || Sbjct 6748927 AAAGTCCTCCCCACCAAGGTGTGTGTCCCCAGATGTGGCTTTCACTTCAAATATGCCATT 6748986 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || || || || || ||||| ||||| ||||| Sbjct 6748987 CTCAATGGTCAGGATKGACACATCAAAGGTGCCTCCGCCGAGATCAAAGATGAGCACGTT 6749046 Query 7579 CGTATCGTCGTCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || || ||||| | ||||| || ||||| || || || || || || ||||| | Sbjct 6749047 GCGCTC-TCCTCTTTTCCCTTTATCCAGGCCGTAAGCRATGGCTGCTGCTGTGGGTTCGT 6749105 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || | ||| |||||| |||| || | | |||||||| || ||||| | | Sbjct 6749106 TGATGATCCTCAGAACGTTCAGTCCAGAGATYACTCCAGCATCTTTGGTGGCTTGCCTCT 6749165 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| || || || || || || | ||| || | | || |||| || ||| Sbjct 6749166 GTGAGTCGTTGAAATAAGCTGGCACTGTAATGACTGCATTTGACACCTTCTGTCCCAGAA 6749225 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 ||| || || || ||| ||||||| | |||||| || |||||||| |||| || Sbjct 6749226 ACGCCTCAGCAATCTCTCTCATTTTAACCAAAACCATTGAAGAAATCTCCTCAGGACAAA 6749285 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | | || ||||| || ||| | || || || | || || | || | || Sbjct 6749286 ARTCCTTTGTTTCCCCTTTATATTCTACCCGAACTTTAGGCTT---CCCATTGTCACTGA 6749342 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937 ||||| | | ||| ||| ||||| |||||| |||| ||||||||| | Sbjct 6749343 CTACCTTGAAAGGCCAGAGTTTTATATCAGACTGGACCACAGGGTCATCAAACTTTCTCC 6749402 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 | || || || || |||||||| | |||||| |||||||| ||| ||||||||| | Sbjct 6749403 CAATGAGCCGTTTGGCATCAAAGATTGTGTTGGCGGGGTTCAGGGCAACTTGGTTCTTGG 6749462 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTT 8056 | || || || || || | ||| | || || || |||||||| | |||| ||||| Sbjct 6749463 CAGCATCTCCAATGAGCCTTTC---TGTGTCTGTGAAGGCGACGTA-GCTGGGAGTCGTC 6749518 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 | || ||||| ||||| || || ||||| || ||| || | || || || || Sbjct 6749519 CTGTTGCCTTGATCGTTGGCGATGATTTCCACCTTTCCGTGCTGGAAAACACCAACACAA 6749578 Query 8117 GAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || || || || || | ||||||||| || ||| Sbjct 6749579 GAGTAGGTGGTGCCCAGATCAATACCAATGGCT 6749611 Score = 167 bits (184), Expect = 3e-36 Identities = 448/683 (66%), Gaps = 8/683 (1%) Strand=Plus/Plus Query 6539 TTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCT 6598 ||||| || ||| ||| | | | ||| || || || |||| ||||| || || ||| Sbjct 6753560 TTCTTGGCTGCGATCTTCTCCCTCTGCTTGTCGTCCTCTGCTTTGTACTTGTCTGCGTCT 6753619 Query 6599 TGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATC 6658 || |||||||| || || || ||||| | | ||||| || || || || || || Sbjct 6753620 TGCACCATCTTCTCGATCTCGTCTTTGCTGAGGCGGCCCTTGTCGTTGGTGATTGTGATT 6753679 Query 6659 TTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCA 6718 || | ||| || | | || || | || ||||| | |||||| || |||||| Sbjct 6753680 TTGTTTATTTTGCCAGTGCTTTTGTCCACGGCCGACACATTTAGAATACCGTTGGCATCA 6753739 Query 6719 ACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAA 6778 | || || |||| | |||||||| ||| || || || | ||| ||||| || | Sbjct 6753740 ATGTCAAAGGTTACCTCGATTTGTGGCACACCTCTAGGAGCTGGTGGGATACCTGTGAGC 6753799 Query 6779 TCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTA 6838 ||||| | ||||| | | |||| || | | | | | ||||||||| || || | | Sbjct 6753800 TCAAACCTCCCAAGCAGATTGTTGTCTTTGGTCATAGCTCTTTCACCTTCGTACACCTGA 6753859 Query 6839 ATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGA 6898 || || | || || ||||| ||| |||||||| || | ||| || || Sbjct 6753860 ATCAGTACTCCTGGCTGGTTATCAGAGTACGTGGAGAAGATCTGAGTCTGCTTCGAGGGG 6753919 Query 6899 ATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGA 6958 || || || || | |||| || ||||||| ||||| ||||||| || | | Sbjct 6753920 ATTGTGGTGTTCCGTTTGATAAGAGGCGTCATAACTCCACCTGCGGTTTCGATACCTAAA 6753979 Query 6959 GACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCT----TCACC 7014 || || |||| ||| |||| || | || || || || ||| ||| || || Sbjct 6753980 GAGAGGGGTGCCACATCCAGCAGCAGCAAATCCTGGACG--TTC--TCCGAAGTGTCGCC 6754035 Query 7015 CGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGT 7074 | | | ||| || || ||||||| || || || || || || ||||| ||||| || | Sbjct 6754036 CATGAGGATAGCAGCCTGGACCGCAGCACCATAGGCCACTGCTTCATCAGGGTTGATGCT 6754095 Query 7075 TTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCG 7134 ||| |||||||||||||| ||||| | ||| ||| | | || ||||| || |||| Sbjct 6754096 TTTGTTCAGTTCTTTACCATTAAAGAAGTCCTGTAAGAGCTTCTGGATTTTGGGTATTCT 6754155 Query 7135 TGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCG 7194 ||| || ||||| |||| || ||||||| | || || ||||| | ||| | ||| | Sbjct 6754156 TGTGGAACCACCAACCAGGACAATTTCATGGATCTTAGACTTATCCAGCTTGGCATCTTG 6754215 Query 7195 AAGTGTTTTTTCGACAGGTTCCA 7217 || | || || || || |||| Sbjct 6754216 CAGGGCCTTCTCAACTGGCTCCA 6754238 >seq92 Length=1742495 Score = 178 bits (196), Expect = 2e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | |||||||||||||| |||||||| Sbjct 391444 GCACCATAAGCTACGGCCTCATCGGGGTTGATGCTCTTATTCAGTTCTTTTCCGTTAAAG 391385 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || ||||| || || || || || || || |||| || || Sbjct 391384 AAGTCCTGCAGCAACTTCTGGATTTTGGGAATACGAGTTGAACCTCCAACCAGGACTATG 391325 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | || || || || ||||| | ||| || || | || || ||||| || | Sbjct 391324 TCCTGGATTTGAGACTTGTCCATCTTGGCGTCGCGGAGGGCCTTCTCCACAGGCTCGAGC 391265 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | | ||||| ||| ||| |||||||| | || ||||| ||||| || ||| Sbjct 391264 GTTCCTCTGAACAGGTCTGCGTTCAGCTCCTCAAACCTCGCCCGGGTGATGGAGGTGTAG 391205 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | ||| ||||| | || || ||||| ||| | | || | | || || | Sbjct 391204 AAATCGATGCCCTCGTACAGGGAGTCGATTTCGATGCTGGCCTGAGTGCTGGACGACAGG 391145 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | ||| || ||||| || | ||||| | || | | ||| || Sbjct 391144 GTGCGCTTAGCTCTCTCGCAGGCCGTGCGCAGGCGACGCACCGCCCTCTTGTTGTCGCTG 391085 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||||| | || ||||| ||||| ||| |||||| | | | || Sbjct 391084 ATGTCCTTCTTGTACTTGCGTTTGAACTC-GGAGATGAAGTGGTTCACCATGCGGTTGTC 391026 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || || || ||||||||||| || || ||||| || || ||||| ||||| || | Sbjct 391025 GAAGTCCTCGCCGCCCAAGTGTGTGTCGCCTGCGGTGGCCTTCACTTCGAAGATGCCATC 390966 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||| | | | || ||||||||||| || || |||||||| || ||||| || || Sbjct 390965 CTCAATTGTCAGGATGGAGACATCAAACGTGCCGCCGCCCAGGTCGAAGATGAGAACATT 390906 >seq1597 Length=45667 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | ||||| || ||||| || || ||||||||||| || || || ||| Sbjct 39606 TTCTTGTCCAACCCGTAGGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGGAGAACA 39547 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||| || ||| | |||||||| || || || || ||||| ||||| |||||| Sbjct 39546 TTGAGACCAGAGATGGTTCCAGCATCTTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAG 39487 Query 7715 GCCGGGACCGTTACGACCGCGT 7736 || || || || | || |||| Sbjct 39486 GCAGGTACTGTGATTACAGCGT 39465 >seq53 Length=2629213 Score = 82.4 bits (90), Expect = 1e-10 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || || || || ||||| || || || || || || ||||||||||| ||||| || ||| Sbjct 110360 TTTTTGTCCAGGCCGTAAGCAATGGCAGCGGCTGTGGGTTCATTAATGATACGCAGCACA 110301 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || |||| || ||| | |||||||| || ||||| || || || || || ||||| Sbjct 110300 -TTGAGACCAGAGATTGTTCCAGCATCTTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTA 110242 Query 7714 GGCCGGGACCGTTA 7727 || || || |||| Sbjct 110241 AGCAGGAACTGTTA 110228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634896332119400