Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq345 102 1e-16 seq33 86.0 8e-12 >seq345 Length=614307 Score = 102 bits (112), Expect = 1e-16 Identities = 261/391 (67%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || |||| || || ||||| || || || ||||||||| |||| |||||| | Sbjct 403505 GACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGT---GGAGAGCAAC 403561 Query 112149 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | |||||||| | ||||| || || || || ||| ||| ||| | ||| || Sbjct 403562 CAGGACTGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCTCGACGAGTGCTGGGGG-GA 403620 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC-GGTGC 112263 ||||||||| || ||||| | |||||| | ||| | ||| || ||| |||| Sbjct 403621 GGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGGGAGGGTGAA-GCGTGTGGTGA 403679 Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 |||| | | ||| | || || | |||| || || ||||| || || || || | Sbjct 403680 AAGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGACCGGAACGCCGTACA 403739 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 || | ||||||||||| || ||| ||||| || || ||||| |||| |||||| Sbjct 403740 TGTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGT 403799 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | |||| | || || || || |||||| || | || ||| ||| || || | Sbjct 403800 GCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACGAGGTGGCAGTTTGCA 403859 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 | || ||||| ||||||||| || ||| || Sbjct 403860 ATCTGGCATCCATCGCTCTCAACATGTACGT 403890 >seq33 Length=3077319 Score = 86.0 bits (94), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 102238 |||||||| | || ||||| || ||||| ||||||||||| || ||||| ||| || Sbjct 3038972 GAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTT-TGCTGC 3039030 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || |||||||| |||||| |||| |||||||| || || || |||||| || || || Sbjct 3039031 CATCTATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTGAT 3039090 Query 102299 C 102299 | Sbjct 3039091 C 3039091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620511289845200