Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq345 147 3e-30 seq38 100 3e-16 seq33 86.0 7e-12 >seq345 Length=614307 Score = 147 bits (162), Expect = 3e-30 Identities = 650/1008 (64%), Gaps = 41/1008 (4%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 404494 CTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 404435 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| |||||||| | |||| || | |||||||| | ||||| | || | Sbjct 404434 GATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 404375 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 404374 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAG 404315 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 106078 ||||| | | || | | ||| ||||| || | | |||||| | | | Sbjct 404314 GCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 404255 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCA--CCCCTTGGGACGTGGGAGAAC 106136 || | || || | ||||||| || | || || | ||||| |||| | ||| | Sbjct 404254 AG-TCGGCGTCTTGT-CCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAG--C 404199 Query 106137 CCTCAAATGTCTCATAGGAACC---TTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 106193 | || | ||||| |||| || || ||| || | || ||||| |||||||| | Sbjct 404198 CTTCGTACGTCTCGTAGGGGCCCAGTTTGGCC---GCGAGCTCGCAGCTGGCCTCCAGAG 404142 Query 106194 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT--C 106251 |||| || ||||| ||||| || | || | | || || || | || | | Sbjct 404141 CGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTC--CGGACTTTC 404084 Query 106252 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 106311 ||| | ||| || ||| || || | || || | ||| || || || | || || || Sbjct 404083 AAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGG 404024 Query 106312 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 106368 ||||| || | || ||| | | | | ||| || || || | || | ||||| Sbjct 404023 CCTGTGGCGTTTGTTGGACAT---CTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAAT 403967 Query 106369 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATC 106425 || ||| | |||||| || ||| | || | || || ||||||| | | || Sbjct 403966 GATCTTGTTCAAGTTTTTG---ACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTC 403910 Query 106426 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 | ||||||| ||| |||| ||| | || ||||| ||||||| ||||||||| Sbjct 403909 ATAAGTGCG---CTCAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAAC 403853 Query 106486 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAAT 106545 ||| ||| || ||||| || | | || || ||||||||| | ||| || Sbjct 403852 TGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGAT 403793 Query 106546 CGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 106605 || |||| ||||| ||||| ||||| |||||||||| || ||||| | |||||| || Sbjct 403792 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGG 403733 Query 106606 CGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAAT 106665 ||| || ||||||||||| |||| | || || | ||| | | ||| || | Sbjct 403732 CGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGCTGCTGAGCTTTCACCAC 403673 Query 106666 GGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 106725 || ||| || ||| |||||| | ||||| || ||||||||||| ||| | Sbjct 403672 ACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTC-CCCCC 403614 Query 106726 CGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--C 106782 || ||| ||| || || || || ||||| | |||||||| | || | Sbjct 403613 AGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACCA--GTCCTGGTTGCT 403556 Query 106783 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG-AT-GAAAAG 106828 ||| || ||||||||||| ||||| || |||||||||| || |||||| Sbjct 403555 CTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAG 403508 >seq38 Length=2821725 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| | | ||||||||||| || || || |||| |||| || || || || Sbjct 1026623 CTCATCATCACTTGTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCC 1026564 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || || | ||||| ||||| ||||||| || ||||||||||||||||| |||||||| Sbjct 1026563 CAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCC 1026504 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 || || ||||| |||| || || || | ||||| Sbjct 1026503 RGTTTCTGTCTGCGACTCGATGATGGCGTACCACA 1026469 >seq33 Length=3077319 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | || |||||||| ||| || ||||| |||||||| || | ||||| Sbjct 3039104 CCTCATCCCTGCTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCT 3039045 Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 | | |||||| || || ||| || || || ||||||||||| |||||||| ||||| Sbjct 3039044 TTAGCCAATAGATGGCAGCA-AAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAAA 3038986 Query 117412 GCAAAAAGGCGCTC 117425 || | ||| ||||| Sbjct 3038985 GCCACAAGTCGCTC 3038972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589761142773400