Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq226 131 4e-25 seq68 89.7 1e-12 >seq226 Length=808630 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| |||| || || | |||||||| Sbjct 361785 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 361726 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| ||||| |||||||| ||||| || Sbjct 361725 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 361666 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| || ||||||||||| ||| ||||| || ||||| | ||| Sbjct 361665 ATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 361609 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 361608 TTGCCAGTGAGGGTCTTGACAAAAATCTGCAT 361577 >seq68 Length=2311667 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || || || || | || ||||| |||| || || | | |||||| Sbjct 1552577 ACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCC 1552518 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || || || |||| || ||||| ||||| ||||||||||| || || Sbjct 1552517 AGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGG 1552458 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| ||| |||| |||||||| Sbjct 1552457 ATCTTAGCCTTCACGGTCTCTATGGTGTC 1552429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109058199285095