Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq68 104 2e-17 seq7633 102 5e-17 >seq68 Length=2311667 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 ||||| ||||| || ||| | || ||| ||||||||||| || ||||| || |||| Sbjct 1552550 ATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTC 1552491 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT 34919 |||||||| | || | || || || || ||||| || |||| |||| | Sbjct 1552490 TGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTG 1552431 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 |||||| ||| || || || || ||||| || || ||||| |||||||||||||||||| Sbjct 1552430 TCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGC 1552371 Query 34980 ATATT 34984 || || Sbjct 1552370 ATGTT 1552366 Score = 98.7 bits (108), Expect = 6e-16 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 ||||| ||||| || ||| | || ||| ||||||||||| || ||||| || |||| Sbjct 1552777 ATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTC 1552718 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT 34919 |||||||| | || | || || || || ||||| || |||| |||| | Sbjct 1552717 TGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTA 1552658 Query 34920 TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGC 34979 |||||| ||| || || || || ||||| || || ||||| |||||||||||||||| | Sbjct 1552657 TCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTC 1552598 Query 34980 AT 34981 || Sbjct 1552597 AT 1552596 >seq7633 Length=1847 Score = 102 bits (112), Expect = 5e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | || ||| ||||| |||| ||||| || Sbjct 1781 CCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGAC 1722 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || ||| ||||||||||| || ||||| || || | |||||||| | || Sbjct 1721 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1662 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || ||||| ||||| ||| || | |||| ||| ||| ||| || Sbjct 1661 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACC 1602 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 || | || ||||| || || ||||| |||||||| |||||||||| Sbjct 1601 TCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324515756481480